| charge |
SBML type "Species" |
| charge,Species-method |
SBML type "Species" |
| charge<-,Species-method |
SBML type "Species" |
| coerce |
SBML type "SBML" |
| coerce,SBML,SBMLDocument-method |
SBML type "SBML" |
| coerce,SBMLDocument,graph-method |
"SBMLDocument" from libsbml |
| coerce,SBMLDocument,SBML-method |
"SBMLDocument" from libsbml |
| compartment |
SBML type "Species" |
| compartment,CompartmentGlyph-method |
SBML type "CompartmentGlyph" |
| compartment,CompartmentVolumeRule-method |
SBML type "CompartmentVolumeRule" |
| compartment,Species-method |
SBML type "Species" |
| Compartment-class |
SBML type "Compartment" |
| compartment<-,CompartmentGlyph-method |
SBML type "CompartmentGlyph" |
| compartment<-,CompartmentVolumeRule-method |
SBML type "CompartmentVolumeRule" |
| compartment<-,Species-method |
SBML type "Species" |
| CompartmentGlyph-class |
SBML type "CompartmentGlyph" |
| compartmentGlyphs |
SBML type "Layout" |
| compartmentGlyphs,Layout-method |
SBML type "Layout" |
| compartmentGlyphs<-,Layout-method |
SBML type "Layout" |
| compartments |
SBML type "Model" |
| compartments,Model-method |
SBML type "Model" |
| compartments<-,Model-method |
SBML type "Model" |
| CompartmentType-class |
SBML Type "CompartmentType" |
| compartmentTypes |
SBML type "Model" |
| compartmentTypes,Model-method |
SBML type "Model" |
| compartmentTypes<-,Model-method |
SBML type "Model" |
| CompartmentVolumeRule-class |
SBML type "CompartmentVolumeRule" |
| constant |
SBML type "Species" |
| constant,Compartment-method |
SBML type "Compartment" |
| constant,Parameter-method |
SBML type "Parameter" |
| constant,Species-method |
SBML type "Species" |
| constant<-,Compartment-method |
SBML type "Compartment" |
| constant<-,Parameter-method |
SBML type "Parameter" |
| constant<-,Species-method |
SBML type "Species" |
| Constraint-class |
SBML Type "Constraint" |
| constraints |
SBML type "Model" |
| constraints,Model-method |
SBML type "Model" |
| constraints<-,Model-method |
SBML type "Model" |
| CubicBezier-class |
SBML type "CubicBezier" |
| curve |
SBML type "ReactionGlyph" |
| curve,ReactionGlyph-method |
SBML type "ReactionGlyph" |
| curve,SpeciesReferenceGlyph-method |
SBML type "SpeciesReferenceGlyph" |
| Curve-class |
SBML type "Curve" |
| curve<-,ReactionGlyph-method |
SBML type "ReactionGlyph" |
| curve<-,SpeciesReferenceGlyph-method |
SBML type "SpeciesReferenceGlyph" |
| curveSegments |
SBML type "Curve" |
| curveSegments,Curve-method |
SBML type "Curve" |
| curveSegments<-,Curve-method |
SBML type "Curve" |
| id |
SBML type "UnitDefinition" |
| id,BoundingBox-method |
SBML type "BoundingBox" |
| id,Compartment-method |
SBML type "Compartment" |
| id,CompartmentType-method |
SBML Type "CompartmentType" |
| id,Event-method |
SBML type "Event" |
| id,FunctionDefinition-method |
SBML type "FunctionDefinition" |
| id,GraphicalObject-method |
SBML type "GraphicalObject" |
| id,Layout-method |
SBML type "Layout" |
| id,Model-method |
SBML type "Model" |
| id,Parameter-method |
SBML type "Parameter" |
| id,Reaction-method |
SBML type "Reaction" |
| id,SimpleSpeciesReference-method |
SBML type "SimpleSpeciesReference" |
| id,Species-method |
SBML type "Species" |
| id,SpeciesType-method |
SBML Type "SpeciesType" |
| id,UnitDefinition-method |
SBML type "UnitDefinition" |
| id<-,BoundingBox-method |
SBML type "BoundingBox" |
| id<-,Compartment-method |
SBML type "Compartment" |
| id<-,CompartmentType-method |
SBML Type "CompartmentType" |
| id<-,Event-method |
SBML type "Event" |
| id<-,FunctionDefinition-method |
SBML type "FunctionDefinition" |
| id<-,GraphicalObject-method |
SBML type "GraphicalObject" |
| id<-,Layout-method |
SBML type "Layout" |
| id<-,Model-method |
SBML type "Model" |
| id<-,Parameter-method |
SBML type "Parameter" |
| id<-,Reaction-method |
SBML type "Reaction" |
| id<-,SimpleSpeciesReference-method |
SBML type "SimpleSpeciesReference" |
| id<-,Species-method |
SBML type "Species" |
| id<-,SpeciesType-method |
SBML Type "SpeciesType" |
| id<-,UnitDefinition-method |
SBML type "UnitDefinition" |
| initialAmount |
SBML type "Species" |
| initialAmount,Species-method |
SBML type "Species" |
| initialAmount<-,Species-method |
SBML type "Species" |
| InitialAssignment-class |
SBML Type "InitialAssignment" |
| initialAssignments |
SBML type "Model" |
| initialAssignments,Model-method |
SBML type "Model" |
| initialAssignments<-,Model-method |
SBML type "Model" |
| initialConcentration |
SBML type "Species" |
| initialConcentration,Species-method |
SBML type "Species" |
| initialConcentration<-,Species-method |
SBML type "Species" |
| math |
SBML type "KineticLaw" |
| math,Constraint-method |
SBML Type "Constraint" |
| math,Delay-method |
SBML Type "Delay" |
| math,EventAssignment-method |
SBML type "EventAssignment" |
| math,FunctionDefinition-method |
SBML type "FunctionDefinition" |
| math,InitialAssignment-method |
SBML Type "InitialAssignment" |
| math,KineticLaw-method |
SBML type "KineticLaw" |
| math,ParameterRule-method |
SBML type "ParameterRule" |
| math,Rule-method |
SBML type "Rule" |
| math,StoichiometryMath-method |
SBML type "StoichiometryMath" |
| math,Trigger-method |
SBML Type "Trigger" |
| math<-,Constraint-method |
SBML Type "Constraint" |
| math<-,Delay-method |
SBML Type "Delay" |
| math<-,EventAssignment-method |
SBML type "EventAssignment" |
| math<-,FunctionDefinition-method |
SBML type "FunctionDefinition" |
| math<-,InitialAssignment-method |
SBML Type "InitialAssignment" |
| math<-,KineticLaw-method |
SBML type "KineticLaw" |
| math<-,ParameterRule-method |
SBML type "ParameterRule" |
| math<-,Rule-method |
SBML type "Rule" |
| math<-,StoichiometryMath-method |
SBML type "StoichiometryMath" |
| math<-,Trigger-method |
SBML Type "Trigger" |
| message,Constraint-method |
SBML Type "Constraint" |
| message<-,Constraint-method |
SBML Type "Constraint" |
| metaId |
SBML type "SBase" |
| metaId,SBase-method |
SBML type "SBase" |
| metaId<-,SBase-method |
SBML type "SBase" |
| model |
SBML type "SBML" |
| model,SBML-method |
SBML type "SBML" |
| Model-class |
SBML type "Model" |
| model<-,SBML-method |
SBML type "SBML" |
| modifiers |
SBML type "Reaction" |
| modifiers,Reaction-method |
SBML type "Reaction" |
| modifiers<-,Reaction-method |
SBML type "Reaction" |
| ModifierSpeciesReference-class |
SBML type "ModifierSpeciesReference" |
| multiplier |
SBML type "Unit" |
| multiplier,Unit-method |
SBML type "Unit" |
| multiplier<-,Unit-method |
SBML type "Unit" |
| name |
SBML type "UnitDefinition" |
| name,Compartment-method |
SBML type "Compartment" |
| name,CompartmentType-method |
SBML Type "CompartmentType" |
| name,Event-method |
SBML type "Event" |
| name,FunctionDefinition-method |
SBML type "FunctionDefinition" |
| name,Model-method |
SBML type "Model" |
| name,Parameter-method |
SBML type "Parameter" |
| name,ParameterRule-method |
SBML type "ParameterRule" |
| name,Reaction-method |
SBML type "Reaction" |
| name,Species-method |
SBML type "Species" |
| name,SpeciesType-method |
SBML Type "SpeciesType" |
| name,UnitDefinition-method |
SBML type "UnitDefinition" |
| name<-,Compartment-method |
SBML type "Compartment" |
| name<-,CompartmentType-method |
SBML Type "CompartmentType" |
| name<-,Event-method |
SBML type "Event" |
| name<-,FunctionDefinition-method |
SBML type "FunctionDefinition" |
| name<-,Model-method |
SBML type "Model" |
| name<-,Parameter-method |
SBML type "Parameter" |
| name<-,ParameterRule-method |
SBML type "ParameterRule" |
| name<-,Reaction-method |
SBML type "Reaction" |
| name<-,Species-method |
SBML type "Species" |
| name<-,SpeciesType-method |
SBML Type "SpeciesType" |
| name<-,UnitDefinition-method |
SBML type "UnitDefinition" |
| notes |
SBML type "SBase" |
| notes,SBase-method |
SBML type "SBase" |
| notes<-,SBase-method |
SBML type "SBase" |
| RateRule-class |
SBML type "RateRule" |
| reactants |
SBML type "Reaction" |
| reactants,Reaction-method |
SBML type "Reaction" |
| reactants<-,Reaction-method |
SBML type "Reaction" |
| reaction |
SBML type "ReactionGlyph" |
| reaction,ReactionGlyph-method |
SBML type "ReactionGlyph" |
| Reaction-class |
SBML type "Reaction" |
| reaction<-,ReactionGlyph-method |
SBML type "ReactionGlyph" |
| ReactionGlyph-class |
SBML type "ReactionGlyph" |
| reactionGlyphs |
SBML type "Layout" |
| reactionGlyphs,Layout-method |
SBML type "Layout" |
| reactionGlyphs<-,Layout-method |
SBML type "Layout" |
| reactions |
SBML type "Model" |
| reactions,Model-method |
SBML type "Model" |
| reactions<-,Model-method |
SBML type "Model" |
| reversible |
SBML type "Reaction" |
| reversible,Reaction-method |
SBML type "Reaction" |
| reversible<-,Reaction-method |
SBML type "Reaction" |
| role |
SBML type "SpeciesReferenceGlyph" |
| role,SpeciesReferenceGlyph-method |
SBML type "SpeciesReferenceGlyph" |
| role<-,SpeciesReferenceGlyph-method |
SBML type "SpeciesReferenceGlyph" |
| rsbml_check |
"SBMLDocument" from libsbml |
| rsbml_check,SBMLDocument-method |
"SBMLDocument" from libsbml |
| rsbml_doc |
SBML type "SBML" |
| rsbml_doc,SBML-method |
SBML type "SBML" |
| rsbml_dom |
"SBMLDocument" from libsbml |
| rsbml_dom,SBMLDocument-method |
"SBMLDocument" from libsbml |
| rsbml_graph |
"SBMLDocument" from libsbml |
| rsbml_graph,SBMLDocument-method |
"SBMLDocument" from libsbml |
| rsbml_problems |
"SBMLDocument" from libsbml |
| rsbml_problems,SBMLDocument-method |
"SBMLDocument" from libsbml |
| rsbml_read |
Read in an SBML file (start here) |
| rsbml_write |
SBML type "SBML" |
| rsbml_write,SBML-method |
SBML type "SBML" |
| rsbml_write,SBMLDocument-method |
"SBMLDocument" from libsbml |
| rsbml_xml |
SBML type "SBML" |
| rsbml_xml,SBML-method |
SBML type "SBML" |
| rsbml_xml,SBMLDocument-method |
"SBMLDocument" from libsbml |
| Rule-class |
SBML type "Rule" |
| rules |
SBML type "Model" |
| rules,Model-method |
SBML type "Model" |
| rules<-,Model-method |
SBML type "Model" |
| SBase-class |
SBML type "SBase" |
| SBML-class |
SBML type "SBML" |
| SBMLDocument-class |
"SBMLDocument" from libsbml |
| scale |
SBML type "Unit" |
| scale,Unit-method |
SBML type "Unit" |
| scale<-,Unit-method |
SBML type "Unit" |
| SimpleSpeciesReference-class |
SBML type "SimpleSpeciesReference" |
| size |
SBML type "Compartment" |
| size,Compartment-method |
SBML type "Compartment" |
| size<-,Compartment-method |
SBML type "Compartment" |
| spatialDimensions |
SBML type "Compartment" |
| spatialDimensions,Compartment-method |
SBML type "Compartment" |
| spatialDimensions<-,Compartment-method |
SBML type "Compartment" |
| spatialSizeUnits |
SBML type "Species" |
| spatialSizeUnits,Species-method |
SBML type "Species" |
| spatialSizeUnits<-,Species-method |
SBML type "Species" |
| species |
SBML type "SpeciesGlyph" |
| species,Model-method |
SBML type "Model" |
| species,SimpleSpeciesReference-method |
SBML type "SimpleSpeciesReference" |
| species,SpeciesConcentrationRule-method |
SBML type "SpeciesConcentrationRule" |
| species,SpeciesGlyph-method |
SBML type "SpeciesGlyph" |
| Species-class |
SBML type "Species" |
| species<-,Model-method |
SBML type "Model" |
| species<-,SimpleSpeciesReference-method |
SBML type "SimpleSpeciesReference" |
| species<-,SpeciesConcentrationRule-method |
SBML type "SpeciesConcentrationRule" |
| species<-,SpeciesGlyph-method |
SBML type "SpeciesGlyph" |
| SpeciesConcentrationRule-class |
SBML type "SpeciesConcentrationRule" |
| speciesGlyph |
SBML type "SpeciesReferenceGlyph" |
| speciesGlyph,SpeciesReferenceGlyph-method |
SBML type "SpeciesReferenceGlyph" |
| SpeciesGlyph-class |
SBML type "SpeciesGlyph" |
| speciesGlyph<-,SpeciesReferenceGlyph-method |
SBML type "SpeciesReferenceGlyph" |
| speciesGlyphs |
SBML type "Layout" |
| speciesGlyphs,Layout-method |
SBML type "Layout" |
| speciesGlyphs<-,Layout-method |
SBML type "Layout" |
| speciesReference |
SBML type "SpeciesReferenceGlyph" |
| speciesReference,SpeciesReferenceGlyph-method |
SBML type "SpeciesReferenceGlyph" |
| SpeciesReference-class |
SBML type "SpeciesReference" |
| speciesReference<-,SpeciesReferenceGlyph-method |
SBML type "SpeciesReferenceGlyph" |
| SpeciesReferenceGlyph-class |
SBML type "SpeciesReferenceGlyph" |
| speciesReferenceGlyphs |
SBML type "ReactionGlyph" |
| speciesReferenceGlyphs,ReactionGlyph-method |
SBML type "ReactionGlyph" |
| speciesReferenceGlyphs<-,ReactionGlyph-method |
SBML type "ReactionGlyph" |
| SpeciesType-class |
SBML Type "SpeciesType" |
| speciesTypes |
SBML type "Model" |
| speciesTypes,Model-method |
SBML type "Model" |
| speciesTypes<-,Model-method |
SBML type "Model" |
| start |
SBML type "LineSegment" |
| start,LineSegment-method |
SBML type "LineSegment" |
| start<-,LineSegment-method |
SBML type "LineSegment" |
| stoichiometry |
SBML type "SpeciesReference" |
| stoichiometry,SpeciesReference-method |
SBML type "SpeciesReference" |
| stoichiometry<-,SpeciesReference-method |
SBML type "SpeciesReference" |
| stoichiometryMath |
SBML type "SpeciesReference" |
| stoichiometryMath,SpeciesReference-method |
SBML type "SpeciesReference" |
| StoichiometryMath-class |
SBML type "StoichiometryMath" |
| stoichiometryMath<-,SpeciesReference-method |
SBML type "SpeciesReference" |
| substanceUnits |
SBML type "KineticLaw" |
| substanceUnits,KineticLaw-method |
SBML type "KineticLaw" |
| substanceUnits,Species-method |
SBML type "Species" |
| substanceUnits<-,KineticLaw-method |
SBML type "KineticLaw" |
| substanceUnits<-,Species-method |
SBML type "Species" |
| symbol |
SBML Type "InitialAssignment" |
| symbol,InitialAssignment-method |
SBML Type "InitialAssignment" |
| symbol<-,InitialAssignment-method |
SBML Type "InitialAssignment" |