| aGFFCalc-class {ACME} | R Documentation |
Store results of ACME calculations
Objects can be created by calls of the form new("aGFFCalc", ...).
call:"call", contains the
exact call to do.aGFF.calc, for historical purposesthreshold:"numeric", the
threshold used in the calculationcutpoints:"numeric", the data
value above which probes were considered positivevals:"matrix", equivalent in
size to the original data matrix, containing the calculated
p-values from the ACME algorithmannotation:"data.frame",
currently a copy of the original annotation, possibly reordered in
chromosome order data:"matrix", the original
data, possibly reorderedsamples:"data.frame", sample
metadata
Class "aGFF", directly.
signature(x = "aGFFCalc", ask=FALSE): plot the results of an
ACME calculationsignature(x = "aGFFCalc"): brief overview of the
objectsignature(object = "aGFFCalc"): brief overview of
the objectSean Davis <sdavis2@mail.nih.gov>
data(example.agff) example.agffcalc <- do.aGFF.calc(example.agff,window=1000,thresh=0.9) example.agffcalc