| injectSNPs {BSgenome} | R Documentation |
Inject SNPs from a package of SNP locations into a genome.
injectSNPs(bsgenome, SNPlocs_pkgname) available.SNPs()
bsgenome |
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SNPlocs_pkgname |
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H. Pages
## Look at the SNP locations packages currently available:
available.SNPs()
if (interactive()) {
## Make your choice and install with:
source("http://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20071016")
## Inject into the Human genome:
library(BSgenome.Hsapiens.UCSC.hg18)
Hsapiens
HsWithSNPs <- injectSNPs(Hsapiens, "SNPlocs.Hsapiens.dbSNP.20071016")
HsWithSNPs
alphabetFrequency(Hsapiens$chr1)
alphabetFrequency(HsWithSNPs$chr1)
}