| MIAME {Biobase} | R Documentation |
Class MIAME covers MIAME entries that are not covered by other classes in Bioconductor. Namely, experimental design, samples, hybridizations, normalization controls, and pre-processing information.
name:character containing the experimenter namelab:character containing the laboratory where the experiment was conductedcontact:character containing contact information for lab and/or experimentertitle:character containing a single-sentence experiment title abstract:character containing an abstract describing the experimenturl:character containing a URL for the experimentsamples:list containg information about the sampleshybridizations:list containing information about the hybridizationsnormControls:list containing information about the controls such as house keeping genespreprocessing:list containing information about the pre-processing steps used on the raw data from this experimentpubMedIds:character listing strings of PubMed identifiers of papers relevant to the datasetother:list containing other information for which none of the above slots does not appliesClass-specific methods:
abstract(MIAME):abstract.combine(MIAME,MIAME):MIAME-class, issuing warnings when ambiguities encountered.expinfo(MIAME):name, lab, contact, title, and url.hybridizations(MIAME):hybridizations.normControls(MIAME):normControls.notes(MIAME), notes(MIAME) <- value:other. notes(MIAME) <- character
appends character to notes; use notes(MIAME) <- list to replace the notes entirely.otherInfo(MIAME):other.preproc(MIAME):preprocessing.pubMedIds(MIAME), pubMedIds(MIAME) <- value:pubMedIds.samples(MIAME):samples.Standard generic methods:
updateObject(object, ..., verbose=FALSE)updateObjectisCurrent(object)isCurrentisVersioned(object)isVersionedshow(MIAME):Rafael A. Irizarry
http://www.mged.org/Workgroups/MIAME/miame_1.1.html
class:characterORMIAME, read.MIAME