| gwSnpScreenResult-class {GGBase} | R Documentation |
Class "gwSnpScreenResult" – container for GGtools gwSnpScreen method outputs and allied objects
Objects can be created by calls of the form new("gwSnpScreenResult", ...).
These will be primarily lists of inference tables (snps are rows,
columns are statistics and p-values). Additional slots
manage analysis metadata.
gwSnpScreenResult is intended for genome-wide analysis of expression for a single gene.
cwSnpScreenResult is intended for the restriction to a single chromosome.
multiGwSnpScreenResult is intended for analyses with multiple genes.
.Data:"list" containing
inference tables (snps are rows, columns are statistics and
p-values) gene:"character" typically
the HUGO symbol of the gene analyzed psid:"character" the
feature identifier of the associated microarray annotation:"character" vector
of relevant annotation package identifier names snpLocPackage:"character" name
of package holding the netCDF store of SNP locations snpLocExtRef:"character" name
of object in snpLocPackage pointing to the external store (SQLite) activeSnpInds:"numeric" vector
telling which SNPs (relative to the referenced netCDF locations store)
were used
Class "list", from data part.
Class "vector", by class "list", distance 2.
Class "AssayData", by class "list", distance 2.
No methods defined with class "gwSnpScreenResult" in the signature in class GGBase. See GGtools gwSnpScreen documentation.
VJ Carey <stvjc@channing.harvard.edu>
showClass("gwSnpScreenResult")
showClass("cwSnpScreenResult")