| gwSnpScreenResult-class {GGtools} | R Documentation |
Class "gwSnpScreenResult" – containers for genome-wide and chromosome-wide snp screen statistics
Objects can be created by calls of the form new("gwSnpScreenResult", ...).
Mild extensions to 'list'.
.Data:"list" list of
data.frames or matrices of test results gene:"character" gene name psid:"character" probe identifier annotation:"character" – propagated
from smlSet snpLocExtRef:"character", full pathname
of external store for snp locations relevant to the smlSet instance from
which gwSnpScreenResult was computed.
Class "list", from data part.
Class "vector", by class "list", distance 2.
Class "AssayData", by class "list", distance 2.
signature(x = "gwSnpScreenResult", y = "ANY"):
plots minus log p values of association tests along chromosomal
coordinatessignature(object = "gwSnpScreenResult"): brief report signature(object = "gwSnpScreenResult"): restricts
chromosomes represented VJ Carey <stvjc@channing.harvard.edu>
showClass("gwSnpScreenResult")
data(hmceuB36.2021)
objects("package:GGBase")
x = gwSnpScreen(genesym("CPNE1"), hmceuB36.2021, chrnum(20))
x