| getUniquePairs {SLGI} | R Documentation |
getUniquePairs can find all the unique pairs from an
interaction matrix and supplementary array genes, or finds only the
unique pairs that shows positive interaction.
getUniquePairs(iMat, respV = character(0), only = FALSE)
iMat |
Adjacency matrix reporting genetic Interactions. Each entry has value 0 or 1, representing positive or negative interaction of corresponding pairs of row and column, respectively. |
respV |
Character vector of all gene names that were tested (found to interact or not) |
only |
has default value FALSE, if TRUE, then only
reports the positively interacted pairs. |
A data.frame with two or three columns. The first two columns are the
query gene name and the array gene name, respectively. If only
is TRUE, the third column shows the interaction status.
Z. Jiang
intM <- c(0,1,0,0,1,1,0,0,1,0,0,1,1,0,1,0)
dim(intM) <- c(4,4)
dimnames(intM) <- list(c("p1","p2","p3","p4"),c("p1","p3","p5","p7") )
respV <- c("p6","p8")
intM
getUniquePairs(intM,respV,only=FALSE)
getUniquePairs(intM,respV,only=TRUE)
getUniquePairs(intM,only=FALSE)
getUniquePairs(intM,only=TRUE)