| SMAPProfile-class {SMAP} | R Documentation |
Holds results from running smap.
Objects are not intended to be created directly but as a result from
running smap.
HMM:"SMAPHMM"observations:"SMAPObservations"P:"numeric" The log joint
posterior probability of the state sequence Q and
parameters of HMM given the observations.Q:"numeric" The optimal state
sequance (path) in the HMM.name:"character" The name of
the object.signature(object = "SMAPProfile"): Returns the log
joint posterior probability. signature(object = "SMAPProfile"): Returns the
optimal state sequence.signature(object = "SMAPProfile"): Returns the
optimized HMM.signature(object = "SMAPProfile"): Returns the
name of the profile.signature(object = "SMAPProfile"):
Returns the observations.signature(x = "SMAPProfile", y = "missing"): A
plot method for the result profile.signature(x = "SMAPProfile"): Creates a new object
of class SMAPProfile with extracted elements as specified by the
indices provided.Robin Andersson, robin.andersson@lcb.uu.se
Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Stahl, T., Dumanski, J. P., Komorowski, J., A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling, submitted