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| SemSim-package | Gene Ontology-based Sematic Similarity Measures |
| geneSim | Semantic Similarity Between Two Gene Products |
| GOCount | Occurrance Frequency of GO Terms |
| mgeneSim | Pairwise Semantic Similarity Scores for a Set of Gene Products |
| mtermSim | Semantic Similarity Between Two Sets of GO Terms |
| Schreiber | SMIR-binding Proteins |
| SemSim | Gene Ontology-based Sematic Similarity Measures |
| termSim | Semantic Similarity of GO Terms |