| ExpressionSetList-class {XDE} | R Documentation |
Each element in the list must be a valid
ExpressionSet. The featureNames must be identical for
each ExpressionSet.
Objects can be created by calls of the form new("ExpressionSetList", ...).
.Data:"list"
Class "list", from data part.
Class "vector", by class "list", distance 2.
Class class.AssayData, by class "list", distance 2.
signature(object =
"ExpressionSetList") Experimental function for filtering an arbitrary
list of ExpressionSets by integrative correlation. Genes are excluded
that do not exceed the fdr threshold in at least 1 of the studies.signature(x = "ExpressionSetList") Subsets each
ExpressionSet element in the list.signature(from = "list", to = "ExpressionSetList")
Coerces a list of ExpressionSet objects to an object of class
ExpressionSetList. The validityMethod for the
ExpressionSetList class will return an error if the
featureNames for each ExpressionSet are not identical.signature(object = "ExpressionSetList")
Accessor for the featureNamessignature(object = "ExpressionSetList") See
geneCentersignature(object="ExpresssionSetList") Coerces
instance of ExpressionSetList to a list and does lapply on the list.
Returns an object of class ExpressionSetListsignature(x = "ExpressionSetList") Numerical
vector giving the number of samples in each ExpressionSetsignature(x = "ExpressionSetList") Numerical: number
of features or genessignature(object = "ExpressionSetList") returns a
list of data.frames. The elements of the list correspond to
the studies in the ExpressionSetList object.signature(object = "ExpressionSetList") Runs
principal components to generate cross-study summary scores of
differential expression in multiple studies. Not meant to be called
directly. See xsScores.signature(object = "ExpressionSetList")
See standardizeSamples
signature(object = "ExpressionSetList")
See studyCenter
signature(object="ExpressionSetList") An lapply for
ExpressionSetList instances. See xapply.signature(object = "ExpressionSetList")
See `zeroNu. R. Scharpf
XdeMcmc-class, XdeParameter-class
showClass("ExpressionSetList")
data(expressionSetList)