| BeadLevelList-class {beadarray} | R Documentation |
A class for storing red and green channel foreground and background intensities from an Illumina experiment.
Objects can be created by calls of the form new("BeadLevelList"), but are usually created by readIllumina.
Objects of this class contain the following slots
beadData: | an environment for storing the raw bead-level data. Each row correspond to a bead and columns the data. |
phenoData: | an 'AnnotatedDataFrame' containing experimental information. |
arrayInfo: | a list containing array information. |
annotation: | character storing annotation package information. |
beadAnno: | a data.frame containing Bead annotation information. |
scanMetrics: | a data.frame containing scanner information. |
signature(.Object = "BeadLevelList")dim(object)The dimension of the
BeadLevelList objectcopyBeadLevelList(object)BeadLevelList objectarrayNames(object,arrays=NULL)BeadLevelList object for selected arrayscombineBeadLevelLists(object1,object2)BeadLevelList objects into onegetArrayData(object,what="G",log=TRUE)what intensities on the log scale from the
BeadLevelListnumBeads(object,arrays=NULL)arrayspData(object)phenoData(object)Mark Dunning and Matt Ritchie