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| attributeSummary | Gives a summary of the attributes groups and categories |
| exportFASTA | Exports getSequence results to FASTA format |
| filterOptions | Displays the filter options |
| filterSummary | Gives a summary of the filters groups and categories |
| filterType | Displays the filter type |
| getAffyArrays | Displays affy identifiers of Affymetrix chips supported by the Ensembl package |
| getBM | Retrieves information from the BioMart database |
| getGene | Retrieves gene annotation information given a vector of identifiers |
| getGO | Retrieves GO information |
| getHomolog | Get homologs |
| getLDS | Retrieves information from two linked datasets |
| getSequence | Retrieves sequences |
| getSNP | Retrieves SNP's between a given chromosome start and end position |
| listAttributes | lists the attributes available in the selected dataset |
| listDatasets | lists the datasets available in the selected BioMart database |
| listFilters | lists the filters available in the selected dataset |
| listMarts | lists the avilable BioMart databases |
| Mart-class | Class Mart |
| martDisconnect | Disconnects from BioMarts |
| parseAttributes | parse attributes |
| parseFilters | parse filters |
| show,Mart-method | Class Mart |
| useDataset | Select a dataset to use and updates Mart object |
| useMart | Connects to the selected BioMart database and dataset |