| qaReport {flowQ} | R Documentation |
This function combines all graphical output of multiple QA process
functions for one flowSet in a single
hyperlinked HTML document.
qaReport(set, qaFunctions, outdir = "./qaReport", argLists, grouping = NULL)
set |
A flowSet |
qaFunctions |
A character vector of the names of QA process functions to be used |
outdir |
The directory to which the HTML report is to be saved. |
argLists |
lists of argument lists for each of the QA process
functions specified via qaFunctions |
grouping |
A character scalar indicating a variable in the
flowSet's phenoData that is used as a
grouping factor in the output. |
This is a simple convenience function to produce HTML QA reports
for a single flowSet given a list of QA
process functions. For more fine-grained control use function
writeQAReport directly.
An entry point to the output of this function can be found at
outdir/index.html.
The function is called for it's side effects
Florian Hahne
qaProcess.marginevents, writeQAReport,
qaProcess, qaProcess.timeline
## Not run:
data(GvHD)
GvHD <- transform(GvHD, "FL1-H"=asinh(`FL1-H`), "FL2-H"=asinh(`FL2-H`))
dest <- tempdir()
qaReport(GvHD, c("qaProcess.timeline", "qaProcess.marginevents"), dest,
list(list(channel="FL1-H", cutoff=1), list(channels=c("FL1-H",
"FL2-H"), cFactor=4)))
browseURL(file.path(dest, "index.html"))
## End(Not run)