| qaProcess.timeline {flowQ} | R Documentation |
This function takes a flowSet as input and
creates all necessary output for a 'timeline' type QA
process. Objects created by this function can be laid out as HTML
using writeQAReport.
qaProcess.timeline(set, channel, outdir, cutoff=1,
name=paste("timeLine", channel), sum.dimensions=c(7,7),
det.dimensions=c(7,7))
set |
A flowSet |
channel |
A character vector of channel names for which margin events are to be recorded |
outdir |
The directory to which the graphical output is to be saved. If multiple QA processes are to be combined, make sure to use the same directory every time. |
cutoff |
The threshold at which the QA process is considered to
be failed. An absolute value in the timeline deviation score as
computed by the timeLinePlot function |
name |
The name of the process used for the headings in the HTML output |
sum.dimensions, det.dimensions |
The pdf dimensions used for the summary and the detailed plots. |
QA processes of type 'timeline' detect unusal patterns in the data acquisition over time.
For more details on how to layout qaProcess objects to
HTML, see writeQAReport and qaReport.
An object of class qaProcess.
Florian Hahne
writeQAReport, qaReport,
qaProcess, qaProcess.marginevents
## Not run: data(GvHD) GvHD <- transform(GvHD, "FL1-H"=asinh(`FL1-H`), "FL2-H"=asinh(`FL2-H`)) dest <- tempdir() qp <- qaProcess.timeline(GvHD, channel="FL1-H", outdir=dest, cutoff=1) qp ## End(Not run)