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| affylist | List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos |
| CustomEndNodeList | Reference GO nodes list. |
| EndNodeList | Reference GO nodes list. |
| getGO.operon | Internal goTools functions |
| getGoCategory | Internal goTools functions |
| getGOID | Internal goTools functions |
| getGOList | Internal goTools functions |
| getGOTerm | Internal goTools functions |
| goChildren | Internal goTools functions |
| goParents | Internal goTools functions |
| gowraper | Internal goTools functions |
| isEndNode | Internal goTools functions |
| ontoCompare | Wrapper functions |
| ontoCompare.main | Internal goTools functions |
| ontoPlot | Wrapper functions |
| operonlist | List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos |
| parentsList | Internal goTools functions |
| parentsListWraper | Internal goTools functions |
| parentsVectWraper | Internal goTools functions |
| updateOligo2GO | Internal goTools functions |