| maigesDE-class {maigesPack} | R Documentation |
This class defines a structure to store the results from differential
expression analysis. This type of analysis can be done using the
functions deGenes2by2Ttest,
deGenes2by2Wilcox and deGenes2by2BootT
for analysis between two biological sample types, or function
deGenesANOVA, for analysis between more than two sample
types using ANOVA models.
Objects of this class are produced by calling the functions deGenes2by2Ttest,
deGenes2by2Wilcox and deGenes2by2BootT
over an object of class maiges or by calling the
function deGenesANOVA over an object of class
maigesANOVA fitting an ANOVA model to the microarray dataset.
GeneInfo:SampleInfo:GeneInfo
above, but containing information about the biological sample
types used in the analysis.fold:stat:p.value:factors:test:Date:V.info:signature(x = 'maigesDE'): plot method for
maigesDE class. Display volcano plots.signature(x = 'maigesDE'): print method for
maigesDE class.signature(x = 'maigesDE'): show method for
maigesDE class.signature(x = 'maigesDE'): summary method for
maigesDE class.Gustavo H. Esteves <gesteves@vision.ime.usp.br>
deGenes2by2Ttest, deGenes2by2Wilcox,
deGenes2by2BootT, deGenesANOVA.