| getLabels {maigesPack} | R Documentation |
Generic function getLabels to extract labels given an
ID to genes or samples.
getLabels(obj, labelID=NULL, sLabel=TRUE) ## Default S3 method: getLabels(obj=NULL, labelID=NULL, sLabel=TRUE) ## S3 method for class 'maigesDE': getLabels(obj=NULL, labelID=NULL, sLabel=TRUE) ## S3 method for class 'maigesDEcluster': getLabels(obj=NULL, labelID=NULL, sLabel=TRUE) ## S3 method for class 'RGList': getLabels(obj=NULL, labelID=NULL, sLabel=TRUE) ## S3 method for class 'MAList': getLabels(obj=NULL, labelID=NULL, sLabel=TRUE) ## S3 method for class 'marrayRaw': getLabels(obj=NULL, labelID=NULL, sLabel=TRUE) ## S3 method for class 'marrayNorm': getLabels(obj=NULL, labelID=NULL, sLabel=TRUE)
obj |
object to look for labels. Methods defined for classes
maigesRaw, maiges,
maigesDE, maigesDEcluster, RGList,
MAList, marrayRaw and
marrayNorm. |
labelID |
character string with label name to be searched. |
sLabel |
logical indicating search in the sample labels, defaults to TRUE. If FALSE search is done for gene labels. |
The name of gene labels are done by the names of the slot Glabels
in objects of classes maigesRaw or
maiges, the slot GeneInfo in objects of classes
maigesDE or maigesDEcluster, the slot
genes in objects of classes RGList or
MAList and the slot maGnames@maInfo in
objects of classes marrayRaw or
marrayNorm.
Equivalently, the name of sample labels are done by the names of the
slots Slabels, SampleInfo, targets and maTargets@maInfo.
Gustavo H. Esteves <gesteves@vision.ime.usp.br>
## Loading dataset data(gastro) ## Getting the 'Tissue' label for samples in maigesRaw class object getLabels(gastro.raw, "Tissue", sLabel=TRUE) ## Getting the 'Type' label for samples in maigesNorm class object getLabels(gastro.summ, "Type", sLabel=TRUE) ## Getting the 'GeneName' label for genes (spots) in maigesRaw class object getLabels(gastro.raw, "GeneName", sLabel=FALSE) ## Getting the 'Annot' label for samples in maigesNorm class object getLabels(gastro.summ, "Annot", sLabel=FALSE)