| pwayGraph-class {pathRender} | R Documentation |
extension to graphNEL for pathway rendering
Objects can be created by calls of the form
new("pwayGraph", nodes, edgeL, edgemode).
There is a plot method that will work reasonably well if the plotting surface is big enough.
pwaySource:"character" KEGG or BIOCARTA nodes:"vector" pathway constituents in the native vocabulary edgeL:"list" constituent
relations in the native vocabulary edgemode:"character" directed,
typically edgeData:"attrData" relationship
attributes nodeData:"attrData" node
attributes graphData:"list" this holds
the special rendering attributes for edges and nodes, for nodes it
seems particularly important to have fixedsize = FALSE
Class graphNEL-class, directly.
Class graph-class, by class "graphNEL", distance 2.
signature(x = "pwayGraph"): renders the pathway Vince Carey <stvjc@channing.harvard.edu>
showClass("pwayGraph")
G1 = graphcMAP("stresspathway")
G1@graphData$nAttrs$labels[1:10]