| AffySNPCNVPDInfoPkgSeed-class {pdInfoBuilder} | R Documentation |
This class represents Platform Design (PD) packages for Affymetrix genomewide (SNP 6.0) arrays.
Objects can be created by calls of the form new("AffySNPCNVPDInfoPkgSeed", cdfFile, csvAnnoFile, csvSeqFile, csvAnnoFileCnv, csvSeqFileCnv, splineParamFile, crlmmInfoFile, referenceDistFile, ...).
cdfFile:csvAnnoFile:csvSeqFile:csvAnnoFileCnv:csvSeqFileCnv:splineParamFile:.predictAccuracy.crlmmInfoFile:crlmm function.snprma.chipName:manufacturer:genomebuild:pdInfoObjectName:geometry:name:version:license:author:email:url:biocViews:
Class "PDInfoPkgSeed", directly.
Class "PkgSeed", by class "PDInfoPkgSeed", distance 2.
signature(object = "AffySNPCNVPDInfoPkgSeed"): ... signature(.Object = "AffySNPCNVPDInfoPkgSeed"): ... signature(object = "AffySNPCNVPDInfoPkgSeed"): ...
The files used for slots splineParamFile, crlmmInfoFile,
and referenceDistFile are generated by the Bioconductor project
for each chip/platform and are hosted in our svn data repository at
https://hedgehog.fhcrc.org/bioc-data/trunk/annotation/parms_store.
When makePdInfoPackage is run, these files are simply copied to
the inst/extdata directory of the generated package.
Benilton Carvalho
showClass("AffySNPCNVPDInfoPkgSeed")