| Model-class {rsbml} | R Documentation |
The central SBML element. Contains the Species,
Reactions, Compartments and other
components of the model. See the SBML specification, at the reference, for
further details.
Objects can be created by calls of the form new("Model", ...).
id:"character" uniquely identifying this component. name:"character" naming this component. functionDefinitions:"list" containing
FunctionDefinitions.unitDefinitions:"list" containing
UnitDefinitions. compartments:"list" containing
Compartments. species:"list" containing
Speciess. parameters:"list" containing
Parameters. rules:"list" containing
Rules. reactions:"list" containing
Reactions. events:"list" containing
Events. layouts:"list" containing
Layouts. speciesTypes:"list" containing
SpeciesTypes.compartmentTypes:"list" containing
CompartmentTypes.constraints:"list" containing
Constraints.initialAssignments:"list" containing
InitialAssignments.modelHistory:ModelHistory recording the history of the
model.metaId:"character" that is an XML ID
"described" by an RDF resource. This links an SBML element to an RDF
resource. RDF may appear anywhere in an SBML element,
but is usually placed inside the annotation element.notes:"character"
containing user-readable XHTML notes about an element. annotation:"character" containing
additional machine-readable information about an element, usually as RDF,
such as BioPAX. This is where application-specific data belongs.cvTerms:"list" containing
instances of CVTerm associated with this
element.sboTerm:"integer" identifying
a term in the Systems Biology Ontology (SBO).
Class "SBase", directly.
signature(object = "Model"): gets the id slot signature(object = "Model"): sets the id slot signature(object = "Model"): gets the name slot signature(object = "Model"): sets the name slot signature(object = "Model"): gets the compartments slot signature(object = "Model"): sets the compartments slot signature(object = "Model"): gets the events slot signature(object = "Model"): sets the events slot signature(object = "Model"): gets the functionDefinitions slot signature(object = "Model"): sets the functionDefinitions slot signature(object = "Model"): gets the layouts slot signature(object = "Model"): sets the layouts slot signature(object = "Model"): gets the parameters slot signature(object = "Model"): sets the parameters slot signature(object = "Model"): gets the species slot signature(object = "Model"): sets the species slot signature(object = "Model"): gets the reactions slot signature(object = "Model"): sets the reactions slot signature(object = "Model"): gets the rules slot signature(object = "Model"): sets the rules slot signature(object = "Model"): gets the unitDefinitions slot signature(object = "Model"): sets the unitDefinitions slot signature(object = "Model"): gets the compartmentTypes slot signature(object = "Model"): sets the compartmentTypes slot signature(object = "Model"): gets the constraints slot signature(object = "Model"): sets the constraints slot signature(object = "Model"): gets the initialAssignments slot signature(object = "Model"): sets the initialAssignments slot signature(object = "Model"): gets the speciesTypes slot signature(object = "Model"): sets the
speciesTypesslot signature(object = "Model"): gets the modelHistory slot signature(object = "Model"): sets the modelHistory slot
Michael Lawrence