| Species-class {rsbml} | R Documentation |
A participant in an SBML model.
Objects can be created by calls of the form new("Species", ...).
id:"character" uniquely identifying this component. name:"character" naming this component. compartment:"character" identifying the
compartment in which this species is located.initialAmount:"numeric" indicating the
initial amount for this species (mutually exclusive with initialConcentration).initialConcentration:"numeric" indicating the
initial concentration for this species (mutually exclusive with initialAmount).substanceUnits:"character" identifying the
units for the amount of this species or the numerator of the concentration.spatialSizeUnits:"character" identifying the
units for the denominator of the species concentration.hasOnlySubstanceUnits:"logical" indicating
whether the quantity of this species is specified as an amount or a concentration.boundaryCondition:"logical". If TRUE,
indicates that the quantity of this species cannot be changed by a reaction.charge:"integer" indicating the electrical
charge of this species.constant:"logical" indicating whether
the quantity of this species can change.units:"character", deprecated. metaId:"character" that is an XML ID
"described" by an RDF resource. This links an SBML element to an RDF
resource. RDF may appear anywhere in an SBML element,
but is usually placed inside the annotation element.notes:"character"
containing user-readable XHTML notes about an element. annotation:"character" containing
additional machine-readable information about an element, usually as RDF,
such as BioPAX. This is where application-specific data belongs.cvTerms:"list" containing
instances of CVTerm associated with this
element.sboTerm:"integer" identifying
a term in the Systems Biology Ontology (SBO).
Class "SBase", directly.
signature(object = "Species"): gets the id slot signature(object = "Species"): sets the id slot signature(object = "Species"): gets the name slot signature(object = "Species"): sets the name slot signature(object = "Species"): gets the boundaryCondition slot signature(object = "Species"): sets the boundaryCondition slot signature(object = "Species"): gets the charge slot signature(object = "Species"): sets the charge slot signature(object = "Species"): gets the compartment slot signature(object = "Species"): sets the compartment slot signature(object = "Species"): gets the constant slot signature(object = "Species"): sets the constant slot signature(object = "Species"): gets the constant slot signature(object = "Species"): sets the constant slot signature(object = "Species"): gets the hasOnlySubstanceUnits slot signature(object = "Species"): sets the hasOnlySubstanceUnits slot signature(object = "Species"): gets the initialAmount slot signature(object = "Species"): sets the initialAmount slot signature(object = "Species"): gets the initialConcentration slot signature(object = "Species"): sets the initialConcentration slot signature(object = "Species"): gets the spatialSizeUnits slot signature(object = "Species"): sets the spatialSizeUnits slot signature(object = "Species"): gets the substanceUnits slot signature(object = "Species"): sets the substanceUnits slot Michael Lawrence