![[R logo]](../../../doc/html/logo.jpg)
A B C D E F G I L M S T U W misc
| activeView | Accessing the active view |
| activeView,argoSession-method | Accessing the active view |
| activeView,argoView-method | Accessing the active view |
| activeView,browserSession-method | Accessing the active view |
| activeView,ucscView-method | Accessing the active view |
| activeView-methods | Accessing the active view |
| activeView<-,argoSession-method | Accessing the active view |
| activeView<--methods | Accessing the active view |
| argoSession-class | Class "argoSession" |
| argoView-class | Class "argoView" |
| basicTrackLine-class | Class "basicTrackLine" |
| browseGenome | Browse a genome |
| browseGenome,ANY-method | Browse a genome |
| browserSession | Get a genome browser session |
| browserSession,browserView-method | Get a genome browser session |
| browserSession,character-method | Get a genome browser session |
| browserSession-class | Class "browserSession" |
| browserSession-methods | Get a genome browser session |
| browserView | Getting browser views |
| browserView,argoSession-method | Getting browser views |
| browserView,ucscSession-method | Getting browser views |
| browserView-class | Class "browserView" |
| browserView-methods | Getting browser views |
| browserViews | Getting the browser views |
| browserViews,argoSession-method | Getting the browser views |
| browserViews,ucscSession-method | Getting the browser views |
| browserViews-methods | Getting the browser views |
| chrid | Getting chromosome ids |
| chrid,ANY-method | Getting chromosome ids |
| chrid,character-method | Getting chromosome ids |
| chrid,trackSet-method | Getting chromosome ids |
| chrid-class | Class "chrid" |
| chrid-methods | Getting chromosome ids |
| close,argoSession-method | Class "argoSession" |
| close,argoView-method | Class "argoView" |
| coerce,basicTrackLine,character-method | Class "basicTrackLine" |
| coerce,basicTrackLine,wigTrackLine-method | Class "wigTrackLine" |
| coerce,character,basicTrackLine-method | Class "basicTrackLine" |
| coerce,character,ucscTrackLine-method | Class "ucscTrackLine" |
| coerce,character,wigTrackLine-method | Class "wigTrackLine" |
| coerce,trackSet,data.frame-method | Class "trackSet" |
| coerce,ucscTrackLine,character-method | Class "ucscTrackLine" |
| coerce,wigTrackLine,basicTrackLine-method | Class "wigTrackLine" |
| coerce,wigTrackLine,character-method | Class "wigTrackLine" |
| dataVals | Get data values |
| dataVals,trackSet-method | Get data values |
| dataVals-methods | Get data values |
| export | Export objects to connections |
| export,ANY,ANY,character-method | Export objects to connections |
| export,ANY,character,character-method | Export objects to connections |
| export,ANY,character,missing-method | Export objects to connections |
| export,ANY,missing,character-method | Export objects to connections |
| export.bed | Export tracks |
| export.bed,trackSet-method | Export tracks |
| export.bed,ucscTrackSet-method | Class "ucscTrackSet" |
| export.gff | Export tracks |
| export.gff,trackSet-method | Export tracks |
| export.gff,ucscTrackSet-method | Class "ucscTrackSet" |
| export.gff1 | Export tracks |
| export.gff1,ANY-method | Export tracks |
| export.gff2 | Export tracks |
| export.gff2,ANY-method | Export tracks |
| export.gff3 | Export tracks |
| export.gff3,ANY-method | Export tracks |
| export.ucsc | Export tracks |
| export.ucsc,trackSet-method | Export tracks |
| export.ucsc,trackSets-method | Export tracks |
| export.ucsc,ucscTrackSet-method | Class "ucscTrackSet" |
| export.wig | Export tracks |
| export.wig,trackSet-method | Export tracks |
| featChrom | Get track feature variables |
| featChrom,trackSet-method | Get track feature variables |
| featEnd | Get track feature variables |
| featEnd,trackSet-method | Get track feature variables |
| featStart | Get track feature variables |
| featStart,trackSet-method | Get track feature variables |
| featStrand | Get track feature variables |
| featStrand,trackSet-method | Get track feature variables |
| genomeBrowsers | Get available genome browsers |
| genomeSegment | Accessing a segment of a genome |
| genomeSegment,argoView-method | Accessing a segment of a genome |
| genomeSegment,browserSession-method | Accessing a segment of a genome |
| genomeSegment,character-method | Accessing a segment of a genome |
| genomeSegment,missing-method | Accessing a segment of a genome |
| genomeSegment,trackSet-method | Accessing a segment of a genome |
| genomeSegment,trackSets-method | Accessing a segment of a genome |
| genomeSegment,ucscCart-method | Accessing a segment of a genome |
| genomeSegment,ucscSession-method | Accessing a segment of a genome |
| genomeSegment,ucscView-method | Accessing a segment of a genome |
| genomeSegment-class | Class "genomeSegment" |
| genomeSegment-methods | Accessing a segment of a genome |
| genomeSegment<-,argoView-method | Accessing a segment of a genome |
| genomeSegment<-,ucscView-method | Accessing a segment of a genome |
| genomeSequence | Retrieving a genome sequence |
| genomeSequence,argoSession-method | Retrieving a genome sequence |
| genomeSequence,ucscSession-method | Retrieving a genome sequence |
| genomeSequence-methods | Retrieving a genome sequence |
| import | Importing objects |
| import,ANY,character,ANY-method | Importing objects |
| import,character,character,ANY-method | Importing objects |
| import,character,missing,ANY-method | Importing objects |
| import,missing,ANY,character-method | Importing objects |
| import.bed | Importing tracks |
| import.bed,ANY-method | Importing tracks |
| import.gff | Importing tracks |
| import.gff,ANY-method | Importing tracks |
| import.gff1 | Importing tracks |
| import.gff1,ANY-method | Importing tracks |
| import.gff2 | Importing tracks |
| import.gff2,ANY-method | Importing tracks |
| import.gff3 | Importing tracks |
| import.gff3,ANY-method | Importing tracks |
| import.ucsc | Importing tracks |
| import.ucsc,ANY-method | Importing tracks |
| import.wig | Importing tracks |
| import.wig,ANY-method | Importing tracks |
| initialize,argoSession-method | Class "argoSession" |
| initialize,trackSet-method | Class "trackSet" |
| initialize,ucscSession-method | Class "ucscSession" |
| laySequence | Load a sequence |
| laySequence,argoSession,character-method | Load a sequence |
| laySequence-methods | Load a sequence |
| layTrack | Laying tracks |
| layTrack,argoSession,trackSet-method | Laying tracks |
| layTrack,browserSession,trackSet-method | Laying tracks |
| layTrack,browserSession,trackSets-method | Laying tracks |
| layTrack,ucscSession,trackSets-method | Laying tracks |
| layTrack-methods | Laying tracks |
| merge,genomeSegment,genomeSegment-method | Class "genomeSegment" |
| show,browserSession-method | Class "browserSession" |
| show,browserView-method | Class "browserView" |
| trackData | Get track data |
| trackData,trackSet-method | Get track data |
| tracks | Accessing track names |
| tracks,argoSession-method | Accessing track names |
| tracks,argoView-method | Accessing track names |
| tracks,ucscSession-method | Accessing track names |
| tracks,ucscTrackModes-method | Accessing track names |
| tracks,ucscView-method | Accessing track names |
| tracks-methods | Accessing track names |
| tracks<-,argoView-method | Accessing track names |
| tracks<-,ucscTrackModes-method | Accessing track names |
| tracks<-,ucscView-method | Accessing track names |
| tracks<--methods | Accessing track names |
| trackSet | Get a trackSet |
| trackSet,argoSession-method | Get a trackSet |
| trackSet,ucscSession-method | Get a trackSet |
| trackSet-class | Class "trackSet" |
| trackSet-methods | Get a trackSet |
| trackSets | Getting a list of trackSets |
| trackSets,list-method | Getting a list of trackSets |
| trackSets,missing-method | Getting a list of trackSets |
| trackSets,trackSet-method | Getting a list of trackSets |
| trackSets-class | Class "trackSets" |
| trackSets-methods | Getting a list of trackSets |
| ucscSession-class | Class "ucscSession" |
| ucscTable | Get a database table from UCSC |
| ucscTable,ucscSession-method | Get a database table from UCSC |
| ucscTrackLine-class | Class "ucscTrackLine" |
| ucscTrackModes | Accessing UCSC track modes |
| ucscTrackModes,character-method | Accessing UCSC track modes |
| ucscTrackModes,missing-method | Accessing UCSC track modes |
| ucscTrackModes,ucscSession-method | Accessing UCSC track modes |
| ucscTrackModes,ucscTracks-method | Accessing UCSC track modes |
| ucscTrackModes,ucscView-method | Accessing UCSC track modes |
| ucscTrackModes-class | Class "ucscTrackModes" |
| ucscTrackModes-methods | Accessing UCSC track modes |
| ucscTrackModes<-,ucscView,character-method | Accessing UCSC track modes |
| ucscTrackModes<-,ucscView,ucscTrackModes-method | Accessing UCSC track modes |
| ucscTrackModes<--methods | Accessing UCSC track modes |
| ucscTrackSet-class | Class "ucscTrackSet" |
| ucscView-class | Class "ucscView" |
| wigTrackLine-class | Class "wigTrackLine" |
| [,trackSet-method | Class "trackSet" |
| [.trackSet | Class "trackSet" |