| BSParams-class {BSgenome} | R Documentation |
Class "BSParams"
Description
A parameter class for representing all parameters needed for running
the bsapply method.
Objects from the Class
Objects can be created by calls of the form new("BSParams", ...).
Slots
X:- a BSgenome object that contains chromosomes that you wish to apply
FUN on
FUN:- the function to apply to each chromosome in the BSgenome object 'X'
exclude:- this is a character vector with strings that will be used to filter
out chromosomes whose names match these strings.
simplify:- TRUE/FALSE value to indicate whether or not the function should try
to simplify the output for you.
maskList:- A named logical vector of maskStates preferred when used with a
BSGenome object. When using the bsapply function, the masks will
be set to the states in this vector.
Methods
bsapply(p)- Performs the function FUN using the
parameters contained within
BSParams.
Author(s)
Marc Carlson
See Also
bsapply
[Package
BSgenome version 1.10.5
Index]