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| $,BSgenome-method | The BSgenome class |
| available.genomes | available.genomes |
| available.SNPs | SNP injection |
| bsapply | bsapply |
| BSgenome | The BSgenome class |
| BSgenome-class | The BSgenome class |
| BSgenomeDataPkgSeed | The BSgenomeForge functions |
| BSgenomeDataPkgSeed-class | The BSgenomeForge functions |
| BSgenomeForge | The BSgenomeForge functions |
| BSParams | Class "BSParams" |
| BSParams-class | Class "BSParams" |
| class:BSgenome | The BSgenome class |
| class:BSgenomeDataPkgSeed | The BSgenomeForge functions |
| class:BSParams | Class "BSParams" |
| forgeBSgenomeDataPkg | The BSgenomeForge functions |
| forgeBSgenomeDataPkg,BSgenomeDataPkgSeed-method | The BSgenomeForge functions |
| forgeBSgenomeDataPkg,character-method | The BSgenomeForge functions |
| forgeBSgenomeDataPkg,list-method | The BSgenomeForge functions |
| forgeMasksFiles | The BSgenomeForge functions |
| forgeSeqFiles | The BSgenomeForge functions |
| forgeSeqlengthsFile | The BSgenomeForge functions |
| getSeq | getSeq |
| injectSNPs | SNP injection |
| injectSNPs,BSgenome-method | SNP injection |
| length,BSgenome-method | The BSgenome class |
| masknames | The BSgenome class |
| masknames,BSgenome-method | The BSgenome class |
| mseqnames | The BSgenome class |
| mseqnames,BSgenome-method | The BSgenome class |
| names,BSgenome-method | The BSgenome class |
| organism | The BSgenome class |
| organism,BSgenome-method | The BSgenome class |
| provider | The BSgenome class |
| provider,BSgenome-method | The BSgenome class |
| providerVersion | The BSgenome class |
| providerVersion,BSgenome-method | The BSgenome class |
| releaseDate | The BSgenome class |
| releaseDate,BSgenome-method | The BSgenome class |
| releaseName | The BSgenome class |
| releaseName,BSgenome-method | The BSgenome class |
| seqlengths | The BSgenome class |
| seqlengths,BSgenome-method | The BSgenome class |
| seqnames | The BSgenome class |
| seqnames,BSgenome-method | The BSgenome class |
| show,BSgenome-method | The BSgenome class |
| SNPcount | SNP injection |
| SNPcount,BSgenome-method | SNP injection |
| SNPlocs | SNP injection |
| SNPlocs,BSgenome-method | SNP injection |
| SNPlocs_pkgname | SNP injection |
| SNPlocs_pkgname,BSgenome-method | SNP injection |
| sourceUrl | The BSgenome class |
| sourceUrl,BSgenome-method | The BSgenome class |
| species | The BSgenome class |
| species,BSgenome-method | The BSgenome class |
| [[,BSgenome-method | The BSgenome class |
| [[<-,BSgenome-method | The BSgenome class |