| hbTestResults-class {GGtools} | R Documentation |
Class "hbTestResults" holds results of tests of association of expression levels with haplotype within haplotype block
Objects can be created by calls of the form new("hbTestResults", ...).
hscores:"list" series of
haplo.stats:::haplo.score results for blocks locs:"numeric" locations
at which blocks were found (mean location within each block) chrnum:"chrnum" chromosome
being analyzed smlSetName:"character" name
of the smlSet harboring data in use rsid:"ANY" can be
a dbSNP id to use as an anchor, or a number constituting
absolute chromosomal location at which blocks will be
sought rad:"numeric" radius
in base pairs around the rsid to be searched for blocks ldStruc:"ANY" the result
of the mapLD:::mapLD function signature(x = "hbTestResults"): extracts
p-values for global score tests, one per block signature(x = "hbTestResults"): extracts
locations of haplotype blocks found (average SNP location within block) signature(x = "hbTestResults"): extracts
haplo.score results as a list, for all blocksVJ Carey <stvjc@channing.harvard.edu>
showClass("hbTestResults")