| iListHandler |
xmlEventParse handlers for PSI-MI XML documents |
| inhibitor |
Extract bait, prey, participant, inhibitor, pubmed, confidence value, interaction type, or neutral component information from an object of psimi25Interaction-class |
| initialize,psimi25Hypergraph-method |
Class "psimi25Hypergraph" |
| INTACT.PSIMI25 |
Supported PSI-MI 2.5 XML data sources |
| interactions |
List interactions in the given psimi25InteractionEntry object |
| interactions,psimi25InteractionEntry-method |
Class "psimi25InteractionEntry" |
| interactionType |
Type of the interaction |
| interactionType,psimi25Interaction-method |
Class "psimi25Interaction" |
| interactorInfo |
Interactor info in a matrix |
| interactorInfo,list-method |
Methods for Function interactorInfo in Package ‘RpsiXML’ |
| interactorInfo,psimi25ComplexEntry-method |
Methods for Function interactorInfo in Package ‘RpsiXML’ |
| interactorInfo,psimi25Graph-method |
Methods for Function interactorInfo in Package ‘RpsiXML’ |
| interactorInfo,psimi25Hypergraph-method |
Methods for Function interactorInfo in Package ‘RpsiXML’ |
| interactorInfo,psimi25InteractionEntry-method |
Methods for Function interactorInfo in Package ‘RpsiXML’ |
| interactorInfo-methods |
Methods for Function interactorInfo in Package ‘RpsiXML’ |
| interactors |
Interactors of the given object |
| interactors,psimi25ComplexEntry-method |
Class "psimi25ComplexEntry" |
| interactors,psimi25Graph-method |
Methods for Function interactors |
| interactors,psimi25Hypergraph-method |
Methods for Function interactors |
| interactors,psimi25InteractionEntry-method |
Class "psimi25InteractionEntry" |
| interactors-methods |
Methods for Function interactors |
| parseComplex |
Parse complex, interactor and experiment from PSI-MI 2.5 XML node |
| parseComplex,psimi25Source-method |
Class "psimi25Source" |
| parseExperiment |
Parse complex, interactor and experiment from PSI-MI 2.5 XML node |
| parseExperiment,psimi25Source-method |
Class "psimi25Source" |
| parseInteractor |
Parse complex, interactor and experiment from PSI-MI 2.5 XML node |
| parseInteractor,psimi25Source-method |
Class "psimi25Source" |
| parsePsimi25Complex |
Parsing PSI-MI 2.5 XML documents into interactions |
| parsePsimi25Interaction |
Parsing PSI-MI 2.5 XML documents into interactions |
| participant |
Extract bait, prey, participant, inhibitor, pubmed, confidence value, interaction type, or neutral component information from an object of psimi25Interaction-class |
| prey |
Extract bait, prey, participant, inhibitor, pubmed, confidence value, interaction type, or neutral component information from an object of psimi25Interaction-class |
| prey,psimi25Interaction-method |
Class "psimi25Interaction" |
| psimi25Complex-class |
Class "psimi25Complex" |
| psimi25ComplexEntry-class |
Class "psimi25ComplexEntry" |
| psimi25Experiment-class |
Class "psimi25Experiment" |
| psimi25Graph-class |
Class "psimi25Graph" ~~~ |
| psimi25Hypergraph-class |
Class "psimi25Hypergraph" |
| psimi25Interaction-class |
Class "psimi25Interaction" |
| psimi25InteractionEntry-class |
Class "psimi25InteractionEntry" |
| psimi25Interactor-class |
A class representing interactor from PSI-MI 2.5 XML files |
| psimi25Source-class |
Class "psimi25Source" |
| psimi25XML2Graph |
Convert a vector of PSI-MI 2.5 XML files into graph objects |
| pubmedID |
Extract bait, prey, participant, inhibitor, pubmed, confidence value, interaction type, or neutral component information from an object of psimi25Interaction-class |
| separateXMLDataByExpt |
Convert a vector of PSI-MI 2.5 XML files into graph objects based on pubmedID |
| show,psimi25Complex-method |
Class "psimi25Complex" |
| show,psimi25ComplexEntry-method |
Class "psimi25ComplexEntry" |
| show,psimi25Graph-method |
Class "psimi25Graph" ~~~ |
| show,psimi25Hypergraph-method |
Class "psimi25Hypergraph" |
| show,psimi25Interaction-method |
Class "psimi25Interaction" |
| show,psimi25InteractionEntry-method |
Class "psimi25InteractionEntry" |
| show,psimi25Interactor-method |
A class representing interactor from PSI-MI 2.5 XML files |
| sourceDb |
Extracts the source database of the given parameter |
| sourceDb,psimi25Complex-method |
Get source database name |
| sourceDb,psimi25Interaction-method |
Get source database name |
| sourceDb,psimi25Interactor-method |
Get source database name |
| sourceDb,psimi25Source-method |
Get source database name |
| sourceDb-methods |
Get source database name |
| sourceId |
Extracts the source database ID of the given paramter |
| sourceId,psimi25Complex-method |
Extracting ID in the source database |
| sourceId,psimi25Interaction-method |
Extracting ID in the source database |
| sourceId,psimi25Interactor-method |
Extracting ID in the source database |
| sourceId-methods |
Extracting ID in the source database |