| psimi25Hypergraph-class {RpsiXML} | R Documentation |
Class to present PSI-MI 2.5 XML data as hypergraph.
Objects can be created by calls of the form psimi25XML2Graph
interactors:"matrix", Object of class "matrix",
interactor information in a matrix, Each row represents one
interactor. Source IDs are used as row names. Each column represents one annotation.
Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID. Only those interactors which are
the nodes of the psimi25Graph is given.
Class Hypergraph, directly.
signature(.Object = "psimi25Hypergraph") signature(object = "psimi25Hypergraph"): show method signature(r = "psimi25Hypergraph"):
translate source ID into other IDs Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>
psimi25XML2Graph,S4classpsimi25Graph-class
showClass("psimi25Hypergraph")