| psimi25Graph-class {RpsiXML} | R Documentation |
A graph object representing data extracted from PSI-MI 2.5 files
Objects can be created by calls of the form psimi25XML2Graph
interactors:"matrix",
interactor information in a matrix, Each row represents one
interactor. Source IDs are used as row names. Each column represents one annotation.
Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID. Only those interactors which are
the nodes of the psimi25Graph is given.
Class graphNEL, directly.
Class graphNEL, by class "graphNEL", distance 2.
signature(object = "psimi25Graph"): show method signature(r = "psimi25Graph"):
translate the source ID into other IDs signature(object="psimi25Graph"): get the
abstract information for the dataset from NCBITony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>
psimi25XML2Graph,S4classpsimi25Hypergraph-class
showClass("psimi25Graph")