| Description |
Class "RtreemixData" |
| Description,RtreemixData-method |
Class "RtreemixData" |
| Description<-,RtreemixData-method |
Class "RtreemixData" |
| distribution |
Method for generating the (scaled) probablility distribution induced with a given mutagenetic trees mixture model |
| distribution,RtreemixModel,character,numeric,numeric-method |
Method for generating the (scaled) probablility distribution induced with a given mutagenetic trees mixture model |
| distribution,RtreemixModel,missing,missing,missing-method |
Method for generating the (scaled) probablility distribution induced with a given mutagenetic trees mixture model |
| distribution-methods |
Method for generating the (scaled) probablility distribution induced with a given mutagenetic trees mixture model |
| generate |
Method for generating a random mutagenetic trees mixture model |
| generate,numeric,numeric-method |
Method for generating a random mutagenetic trees mixture model |
| generate-methods |
Method for generating a random mutagenetic trees mixture model |
| get.tree.levels |
Function for constructing level vectors |
| getData |
Class "RtreemixGPS" |
| getData,RtreemixGPS-method |
Class "RtreemixGPS" |
| getData,RtreemixModel |
Class "RtreemixModel" |
| getData,RtreemixModel-method |
Class "RtreemixModel" |
| getData,RtreemixStats |
Class "RtreemixStats" |
| getData,RtreemixStats-method |
Class "RtreemixStats" |
| getModel |
Class "RtreemixSim" |
| getModel,RtreemixSim-method |
Class "RtreemixSim" |
| getResp |
Class "RtreemixStats" |
| getResp,RtreemixStats-method |
Class "RtreemixStats" |
| getTree |
Class "RtreemixModel" |
| getTree,RtreemixModel,numeric-method |
Class "RtreemixModel" |
| GPS |
Class "RtreemixGPS" |
| gps |
Methods for predicting the GPS of given dataset by using a given mutagenetic trees mixture model |
| GPS,RtreemixGPS-method |
Class "RtreemixGPS" |
| gps,RtreemixModel,matrix-method |
Methods for predicting the GPS of given dataset by using a given mutagenetic trees mixture model |
| gps,RtreemixModel,missing-method |
Methods for predicting the GPS of given dataset by using a given mutagenetic trees mixture model |
| gps,RtreemixModel,RtreemixData-method |
Methods for predicting the GPS of given dataset by using a given mutagenetic trees mixture model |
| gps-methods |
Methods for predicting the GPS of given dataset by using a given mutagenetic trees mixture model |
| gpsCI |
Class "RtreemixGPS" |
| gpsCI,RtreemixGPS-method |
Class "RtreemixGPS" |
| Patients |
Class "RtreemixData" |
| Patients,RtreemixData-method |
Class "RtreemixData" |
| Patients<-,RtreemixData-method |
Class "RtreemixData" |
| plot |
Method for visualizing mutagenetic trees mixture models |
| plot,RtreemixModel,missing-method |
Method for visualizing mutagenetic trees mixture models |
| plot,RtreemixModel-method, missing-method |
Class "RtreemixModel" |
| plot-methods |
Method for visualizing mutagenetic trees mixture models |
| print,RtreemixData-method |
Class "RtreemixData" |
| print,RtreemixGPS-method |
Class "RtreemixGPS" |
| print,RtreemixModel-method |
Class "RtreemixModel" |
| print,RtreemixSim-method |
Class "RtreemixSim" |
| print,RtreemixStats-method |
Class "RtreemixStats" |
| Pval.dist |
p-value of a given similarity value |
| Sample |
Class "RtreemixData" |
| Sample,RtreemixData-method |
Class "RtreemixData" |
| sampleSize |
Class "RtreemixData" |
| sampleSize,RtreemixData-method |
Class "RtreemixData" |
| SamplingMode |
Class "RtreemixGPS" |
| SamplingMode,RtreemixGPS-method |
Class "RtreemixGPS" |
| SamplingMode,RtreemixSim |
Class "RtreemixSim" |
| SamplingMode,RtreemixSim-method |
Class "RtreemixSim" |
| SamplingParam |
Class "RtreemixGPS" |
| SamplingParam,RtreemixGPS-method |
Class "RtreemixGPS" |
| SamplingParam,RtreemixSim |
Class "RtreemixSim" |
| SamplingParam,RtreemixSim-method |
Class "RtreemixSim" |
| SamplingTimes |
Class "RtreemixSim" |
| SamplingTimes,RtreemixSim-method |
Class "RtreemixSim" |
| show,RtreemixData-method |
Class "RtreemixData" |
| show,RtreemixGPS-method |
Class "RtreemixGPS" |
| show,RtreemixModel-method |
Class "RtreemixModel" |
| show,RtreemixSim-method |
Class "RtreemixSim" |
| show,RtreemixStats-method |
Class "RtreemixStats" |
| sim |
Method for simulating data from a mutagenetic trees mixture model |
| sim,RtreemixModel,character,numeric-method |
Method for simulating data from a mutagenetic trees mixture model |
| sim,RtreemixModel,missing,missing-method |
Method for simulating data from a mutagenetic trees mixture model |
| sim-methods |
Method for simulating data from a mutagenetic trees mixture model |
| SimPatterns |
Class "RtreemixSim" |
| SimPatterns,RtreemixSim-method |
Class "RtreemixSim" |
| stability.sim |
Stability analysis of the mutagenetic trees mixture model |
| Star |
Class "RtreemixModel" |
| Star,RtreemixModel-method |
Class "RtreemixModel" |