| xmcmc {XDE} | R Documentation |
An object of class XdeMcmc is created by fitting the Bayesian
hierarchical model to the expressionSetList example data.
data(xmcmc)
The xmcmc data example was obtained as described in the
XDE vignette.
data(xmcmc)
xmcmc
##ordinarily, one should not need to change the directory in an object
##of class XdeMcmc -- therefore, a replacment method is not defined
pathToLogFiles <- system.file("logFiles", package="XDE")
xmcmc@directory <- pathToLogFiles
##The $ operator can be used to extract chains. For instance, here we
##extract the c2 chain
c2 <- xmcmc$c2
if(require(coda)){
plot(as.mcmc(c2))
}