| cosmo-class {cosmo} | R Documentation |
An object of class "cosmo" is automatically created after calling the 'cosmo' function and summarizes the results.
Objects can be created by calls of the form new("cosmo", ...).
seqs:pwm:pwm representing the
estimated position weight matrix.back:tmat:cand:cons:sel:motifs:"align" representing
the predicted motif occurrences.probs:objectCall:
signature(object = "cosmo",...) Summarizes the
cosmo object.signature(x = "cosmo",type="PWM", ...)
If type == "PWM", plots the sequence logo of the discovered
motif. If type == "prob", plots the posterior probabilities
of motif occurrences along all input sequences.
signature(x = "cosmo",...) Prints the discovered motifs along with the
sequences they were discovered on, the starting positions, the
strand, and the posterior probability of a motif occurrence at this
site. Also prints the estimates position weight matrix.signature(object = "cosmo") Prints the discovered motifs along with the
sequences they were discovered on, the starting positions, the
strand, and the posterior probability of a motif occurrence at this
site. Oliver Bembom, bembom@berkeley.edu