| qaProcess.cellnumber {flowQ} | R Documentation |
This function takes a flowSet as input and
creates all necessary output for a 'cellnumber' type QA process. Objects
created by this function can be laid out as HTML using
writeQAReport.
qaProcess.cellnumber(set, grouping=NULL, outdir, cFactor=0.5, name="cell number", sum.dimensions=c(7,7), ...)
set |
A flowSet |
grouping |
A character vector defining one of the variables in
the phenoData of set used as a grouping variable. If this
argument is uses, comparisons will be made within groups rather than
across all samples. |
outdir |
The directory to which the graphical output is to be saved. If multiple QA processes are to be combined, make sure to use the same directory every time. |
cFactor |
The threshold at which the QA process is considered to be failed. The factor of standard deviations away from the average number of cells per sample |
name |
The name of the process used for the headings in the HTML output |
sum.dimensions |
The pdf dimensions used for the summary. |
... |
Further arguments. |
QA processes of type 'cellnumber' detect aberations in the number of cells analyzed per frame.
For more details on how to layout qaProcess objects to
HTML, see writeQAReport and qaReport.
An object of class qaProcess.
Florian Hahne
writeQAReport, qaReport,
qaProcess, qaProcess.marginevents,
qaProcess.timeflow, qaProcess.timeline
## Not run: data(GvHD) dest <- tempdir() qp <- qaProcess.cellnumber(GvHD, outdir=dest, cFactor=1) qp ## End(Not run)