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| goProfiles-package | Performs Gene Ontology based analysis using Functional Profiles. |
| as.GOTerms.frame | Functions to transformconvert objects between different types |
| as.GOTerms.list | Functions to transformconvert objects between different types |
| basicCD4 | Sample Profiles computed on some datasets in the package |
| basicHugo | Sample Profiles computed on some datasets in the package |
| basicProfile | Builds basic functional profile |
| basicSingh01 | Sample Profiles computed on some datasets in the package |
| basicWelsh01 | Sample Profiles computed on some datasets in the package |
| BioCpack2EntrezIDS | Functions to transformconvert objects between different types |
| BioCpack2Profiles | Functions to transformconvert objects between different types |
| BioCprobes2Entrez | Functions to transformconvert objects between different types |
| CD4GOTermsFrame | Entrez identifiers for CD4-TCells example |
| CD4GOTermsList | Entrez identifiers for CD4-TCells example |
| CD4LLids | Entrez identifiers for CD4-TCells example |
| commonExpandedWelsh01Singh01 | Sample Profiles computed on some datasets in the package |
| compareGeneLists | Compares two lists of genes by building (expanded) profiles and comparing them |
| compareGOProfiles | Comparison of lists of genes through their functional profiles |
| compareProfilesLists | Compares two of expanded profiles |
| compSummary | This function returns a brief summary of the comparison between two (expanded) profiles. |
| diseaseIds | Entrez identifiers for disease-related genes in the OMIM database |
| dominantIds | Entrez identifiers for disease-related genes in the OMIM database |
| dominantIdsEBI | Entrez identifiers for disease-related genes in the OMIM database |
| dominantIdsNCBI | Entrez identifiers for disease-related genes in the OMIM database |
| drosophilaIds | Entrez identifiers for genes related with an eye mutation in drosophila |
| equivalentGOProfiles | Are two lists of genes equivalent in terms of their Gene Ontology profiles? |
| equivSummary | This function returns a brief summary of the equivalence test between two profiles. |
| expandedCD4 | Sample Profiles computed on some datasets in the package |
| expandedHugo | Sample Profiles computed on some datasets in the package |
| expandedLevel | Function to create expanded levels which can contain GO Terms at different GO levels |
| expandedProfile | Builds expanded profiles |
| expandedSingh01 | Sample Profiles computed on some datasets in the package |
| expandedWelsh01 | Sample Profiles computed on some datasets in the package |
| expandTerm | Function to create expanded levels which can contain GO Terms at different GO levels |
| fitGOProfile | Does a "sample" GO profile 'pn', observed in a sample of 'n' genes, fit a "population" or "model" p0? |
| getAncestorsLst | Functions to create and manage lists of GO terms associated with a vector of 'Entrez' identifiers |
| getGOLevel | Functions to create and manage lists of GO terms associated with a vector of 'Entrez' identifiers |
| goProfiles | Performs Gene Ontology based analysis using Functional Profiles. |
| GOTermsFrame2GOTermsList | Functions to transformconvert objects between different types |
| GOTermsList | Functions to create and manage lists of GO terms associated with a vector of 'Entrez' identifiers |
| hugoIds | Entrez Identifiers obtained from the Human Genome Organization |
| mergeProfilesLists | Combines two lists of profiles into one |
| michaudIds | Entrez identifiers for genes related with an eye mutation in drosophila |
| morbidmapIds | Entrez identifiers for disease-related genes in the OMIM database |
| omimIds | Entrez identifiers for disease-related genes in the OMIM database |
| ostrinIds | Entrez identifiers for genes related with an eye mutation in drosophila |
| plotProfiles | Plot functional profiles |
| printProfiles | Print functional profiles |
| prostateIds | Prostate cancer-related genes |
| recessiveIds | Entrez identifiers for disease-related genes in the OMIM database |
| recessiveIdsEBI | Entrez identifiers for disease-related genes in the OMIM database |
| recessiveIdsNCBI | Entrez identifiers for disease-related genes in the OMIM database |
| sampleProfiles | Sample Profiles computed on some datasets in the package |
| singh01EntrezIDs | Prostate cancer-related genes |
| singh05EntrezIDs | Prostate cancer-related genes |
| welsh01EntrezIDs | Prostate cancer-related genes |
| welsh05EntrezIDs | Prostate cancer-related genes |