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| LPSeset | ExpressionSet for Testing PLGEM |
| plgem.deg | Selection of differentially expressed genes/proteins using PLGEM |
| plgem.fit | PLGEM Fitting and Evaluation |
| plgem.obsStn | Computation of Observed and Resampled PLGEM-STN statistics |
| plgem.pValue | Computation of PLGEM p-values |
| plgem.resampledStn | Computation of Observed and Resampled PLGEM-STN statistics |
| plgem.write.summary | Write a list of differentially expressed genes/proteins to the disk |
| run.plgem | Wrapper for Power Law Global Error Model (PLGEM) analysis method |