| chrid |
Getting chromosome ids |
| chrid,ANY-method |
Getting chromosome ids |
| chrid,character-method |
Getting chromosome ids |
| chrid,trackSet-method |
Getting chromosome ids |
| chrid-class |
Class "chrid" |
| chrid-methods |
Getting chromosome ids |
| chrom,genomeSegment-method |
Class "genomeSegment" |
| chrom,trackSet-method |
Class "trackSet" |
| chrom<-,genomeSegment-method |
Class "genomeSegment" |
| close,argoSession-method |
Class "argoSession" |
| close,argoView-method |
Class "argoView" |
| coerce,basicTrackLine,character-method |
Class "basicTrackLine" |
| coerce,basicTrackLine,wigTrackLine-method |
Class "wigTrackLine" |
| coerce,character,basicTrackLine-method |
Class "basicTrackLine" |
| coerce,character,ucscTrackLine-method |
Class "ucscTrackLine" |
| coerce,character,wigTrackLine-method |
Class "wigTrackLine" |
| coerce,trackSet,data.frame-method |
Class "trackSet" |
| coerce,ucscTrackLine,character-method |
Class "ucscTrackLine" |
| coerce,wigTrackLine,basicTrackLine-method |
Class "wigTrackLine" |
| coerce,wigTrackLine,character-method |
Class "wigTrackLine" |
| cpneTrack |
CPNE1 SNP track |
| end,genomeSegment-method |
Class "genomeSegment" |
| end,trackSet-method |
Class "trackSet" |
| end<-,genomeSegment-method |
Class "genomeSegment" |
| export |
Export objects to connections |
| export,ANY,ANY,character-method |
Export objects to connections |
| export,ANY,character,character-method |
Export objects to connections |
| export,ANY,character,missing-method |
Export objects to connections |
| export,ANY,missing,character-method |
Export objects to connections |
| export.bed |
Export tracks |
| export.bed,trackSet-method |
Export tracks |
| export.bed,ucscTrackSet-method |
Class "ucscTrackSet" |
| export.gff |
Export tracks |
| export.gff,trackSet-method |
Export tracks |
| export.gff,ucscTrackSet-method |
Class "ucscTrackSet" |
| export.gff1 |
Export tracks |
| export.gff1,ANY-method |
Export tracks |
| export.gff2 |
Export tracks |
| export.gff2,ANY-method |
Export tracks |
| export.gff3 |
Export tracks |
| export.gff3,ANY-method |
Export tracks |
| export.ucsc |
Export tracks |
| export.ucsc,trackSet-method |
Export tracks |
| export.ucsc,trackSets-method |
Export tracks |
| export.ucsc,ucscTrackSet-method |
Class "ucscTrackSet" |
| export.wig |
Export tracks |
| export.wig,trackSet-method |
Export tracks |
| genome,genomeSegment-method |
Class "genomeSegment" |
| genome,trackSet-method |
Class "trackSet" |
| genome<-,genomeSegment-method |
Class "genomeSegment" |
| genomeBrowsers |
Get available genome browsers |
| genomeSegment |
Accessing a segment of a genome |
| genomeSegment,argoView-method |
Accessing a segment of a genome |
| genomeSegment,browserSession-method |
Accessing a segment of a genome |
| genomeSegment,character-method |
Accessing a segment of a genome |
| genomeSegment,IRanges-method |
Accessing a segment of a genome |
| genomeSegment,missing-method |
Accessing a segment of a genome |
| genomeSegment,trackSet-method |
Accessing a segment of a genome |
| genomeSegment,trackSets-method |
Accessing a segment of a genome |
| genomeSegment,ucscCart-method |
Accessing a segment of a genome |
| genomeSegment,ucscSession-method |
Accessing a segment of a genome |
| genomeSegment,ucscView-method |
Accessing a segment of a genome |
| genomeSegment-class |
Class "genomeSegment" |
| genomeSegment-methods |
Accessing a segment of a genome |
| genomeSegment<-,argoView-method |
Accessing a segment of a genome |
| genomeSegment<-,ucscView-method |
Accessing a segment of a genome |
| genomeSequence |
Retrieving a genome sequence |
| genomeSequence,argoSession-method |
Retrieving a genome sequence |
| genomeSequence,ucscSession-method |
Retrieving a genome sequence |
| genomeSequence-methods |
Retrieving a genome sequence |
| trackData |
Get track data |
| trackData,trackSet-method |
Get track data |
| tracks |
Accessing track names |
| tracks,argoSession-method |
Accessing track names |
| tracks,argoView-method |
Accessing track names |
| tracks,ucscSession-method |
Accessing track names |
| tracks,ucscTrackModes-method |
Accessing track names |
| tracks,ucscView-method |
Accessing track names |
| tracks-methods |
Accessing track names |
| tracks<-,argoView-method |
Accessing track names |
| tracks<-,ucscTrackModes-method |
Accessing track names |
| tracks<-,ucscView-method |
Accessing track names |
| tracks<--methods |
Accessing track names |
| trackSet |
Get a trackSet |
| trackSet,AnnotatedDataFrame-method |
Get a trackSet |
| trackSet,argoSession-method |
Get a trackSet |
| trackSet,character-method |
Get a trackSet |
| trackSet,data.frame-method |
Get a trackSet |
| trackSet,IRanges-method |
Get a trackSet |
| trackSet,ucscSession-method |
Get a trackSet |
| trackSet-class |
Class "trackSet" |
| trackSet-methods |
Get a trackSet |
| trackSets |
Getting a list of trackSets |
| trackSets,list-method |
Getting a list of trackSets |
| trackSets,missing-method |
Getting a list of trackSets |
| trackSets,trackSet-method |
Getting a list of trackSets |
| trackSets-class |
Class "trackSets" |
| trackSets-methods |
Getting a list of trackSets |
| ucscSession-class |
Class "ucscSession" |
| ucscTable |
Get a database table from UCSC |
| ucscTable,ucscSession-method |
Get a database table from UCSC |
| ucscTrackLine-class |
Class "ucscTrackLine" |
| ucscTrackModes |
Accessing UCSC track modes |
| ucscTrackModes,character-method |
Accessing UCSC track modes |
| ucscTrackModes,missing-method |
Accessing UCSC track modes |
| ucscTrackModes,ucscSession-method |
Accessing UCSC track modes |
| ucscTrackModes,ucscTracks-method |
Accessing UCSC track modes |
| ucscTrackModes,ucscView-method |
Accessing UCSC track modes |
| ucscTrackModes-class |
Class "ucscTrackModes" |
| ucscTrackModes-methods |
Accessing UCSC track modes |
| ucscTrackModes<-,ucscView,character-method |
Accessing UCSC track modes |
| ucscTrackModes<-,ucscView,ucscTrackModes-method |
Accessing UCSC track modes |
| ucscTrackModes<--methods |
Accessing UCSC track modes |
| ucscTrackSet-class |
Class "ucscTrackSet" |
| ucscView-class |
Class "ucscView" |