| stamNode-class {stam} | R Documentation |
Objects of this class and its subclasses represent single nodes in a classifier net as it is used by structured analysis of microarray data.
Objects can be created by calls of the form new("stamNode", ID, supNode).
ID:"character", holds the GO identifier as
character stringcategory:"character", represents the GO
ontology the node belongs (MF: molecular function, BP: biological process, CC:
cellular component).replacedParents:"character", holds all GO
identifiers of nodes which have been removed, because the had only one child.supNode:"logical", indicates whether the nodes
has been added to avoid nodes which have both directly annotated genes as well as
children in the classifier graphsignature(x = "stamNode"): returns the identifiers of the
direct children of node x in the Gene Ontology.signature(x = "character"): returns the identifiers of
the direct children of the node with identifier x in the Gene Ontology.signature(x = "stamNode"): returns the identifiers of the
direct parents of node x in the Gene Ontology.signature(x = "character"): returns the identifiers of the
direct parents of the node with identifier x in the Gene Ontology.signature(x = "stamNode"): returns the GO term represented by
node x.signature(x = "character"): returns the GO term represented by
the node with identifier x.signature(x = "stamNode") print information on the node.signature(x = "stamNode") generate HTML information on the
node.Claudio Lottaz
stamLeaf-class, stamINode-class