| stamEval-class {stam} | R Documentation |
Objects of this class are returned by ctam.evaluate. Results of all steps in a
structured analysis of microarray data are stored.
Objects can be created by calls of the form
new("stamEval", exprs, cv, fit, pred, testset), but using stam.evaluate
is recommended.
chip:"character", the name of the chip for
which the classifier net is generated.exprs:"matrix", the plain matrix of
expression levels [probesets x samples], rownames and colnames are expected to be
definedcv:"stamCV", store cross validation resultsfit:"stamFit", store model fitpred:"stamPrediction", store
prediction resultstestset:"numeric", indices of samples treated
as test set. The others are used for trainig.signature(x = "stamEval"): generate HTML information on a
complete StAM analysis, but using stam.writeHTML is recommended.Claudio Lottaz
stam.evaluate, stamCV-class,
stamFit-class, stamPrediction-class,
stam.writeHTML