| UniFilter-class {xps} | R Documentation |
Class UniFilter allows to apply different unitest filters to class ExprTreeSet,
i.e. to the expression level data.frame data.
Objects can be created by calls of the form new("UniFilter", ...).
Alternatively, the contructor UniFilter can be used.
foldchange:"list" describing parameters for fcFilter.prescall:"list" describing parameters for callFilter.unifilter:"list" describing parameters for unitestFilter.unitest:"list" describing parameters for uniTest.numfilters:"numeric" giving the number of filters applied.
Class "Filter", directly.
signature(object = "UniFilter"): extracts slot prescall.signature(object = "UniFilter", value = "character"): replaces
slot prescall with character vector c(cutoff, samples, condition).signature(object = "UniFilter"): extracts slot foldchange.signature(object = "UniFilter", value = "numeric"): replaces
slot foldchange with numeric vector c(cutoff, direction).signature(object = "UniFilter"): extracts slot unitest.signature(object = "UniFilter", value = "character"): replaces
slot unitest with character vector c(type, alternative, correction, numperm, mu, paired, conflevel, varequ).signature(object = "UniFilter"): extracts slot unifilter.signature(object = "UniFilter", value = "character"): replaces
slot unifilter with character vector c(cutoff, variable).Christian Stratowa
related classes Filter, PreFilter.
unifltr <- new("UniFilter", unitest=list("t.test"))
fcFilter(unifltr) <- c(1.5,"both")
unitestFilter(unifltr) <- c(0.01,"pval")
str(unifltr)