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| arrays | Accessor Methods for YAQCStats class |
| arrays,YAQCStats-method | Class "YAQCStats" |
| arrays-methods | Class "YAQCStats" |
| avns | Accessor Methods for YAQCStats class |
| avns,YAQCStats-method | Class "YAQCStats" |
| avns-methods | Class "YAQCStats" |
| bioCalls | Accessor Methods for YAQCStats class |
| bioCalls,YAQCStats-method | Class "YAQCStats" |
| bioCalls-methods | Class "YAQCStats" |
| gcosProbes | Accessor Methods for YAQCStats class |
| gcosProbes,YAQCStats-method | Class "YAQCStats" |
| gcosProbes-methods | Class "YAQCStats" |
| getAllInt | Get the GCOS values for a given spike probe |
| getBioProbes | Get the names of the Bio spike probes on the array |
| getOutliers | Get outliers for the different YAQCStatsObject slots |
| getQCRatios | Compute qc probe ratios using GCOS intensity values |
| getRatioProbes | Get the names of degradation control probes on the array |
| getSpikeProbes | Get the names of all spike probes on the array |
| isLog | Accessor Methods for YAQCStats class |
| isLog,YAQCStats-method | Class "YAQCStats" |
| isLog-methods | Class "YAQCStats" |
| merge,YAQCStats-method | Class "YAQCStats" |
| moreSpikeInProbes | Accessor Methods for YAQCStats class |
| moreSpikeInProbes,YAQCStats-method | Class "YAQCStats" |
| moreSpikeInProbes-methods | Class "YAQCStats" |
| morespikes | The name of more spike probes |
| plot | Accessor Methods for YAQCStats class |
| plot,YAQCStats | Plots a YAQCStats object |
| plot,YAQCStats,ANY-method | Class "YAQCStats" |
| plot,YAQCStats,missing-method | Plots a YAQCStats object |
| plot,YAQCStats-method | Plots a YAQCStats object |
| reprodPlot | Plot human whole genome GeneChips reproductibility |
| show,YAQCStats-method | Class "YAQCStats" |
| target,YAQCStats-method | Class "YAQCStats" |
| target-methods | Class "YAQCStats" |
| yaqc | Generate QC stats from an AffyBatch object |
| yaqc,eSet-method | Create an YAQCStat object |
| yaqc-methods | Create an YAQCStat object |
| yaqc.affy | Generate QC stats from an AffyBatch object |
| yaqc.plot | Plots a YAQCStats object |
| YAQCStats-class | Class "YAQCStats" |