| checkMAPCOUNTS |
Check the SQL data contained in an SQLite-based annotation package |
| class:AgiAnnDbMap |
Bimap objects and the Bimap interface |
| class:AnnDbBimap |
Bimap objects and the Bimap interface |
| class:AnnDbMap |
Bimap objects and the Bimap interface |
| class:AnnDbObj |
AnnDbObj objects |
| class:AnnDbPkgSeed |
Creates an SQLite-based annotation package |
| class:Bimap |
Bimap objects and the Bimap interface |
| class:Go3AnnDbBimap |
Bimap objects and the Bimap interface |
| class:GoAnnDbBimap |
Bimap objects and the Bimap interface |
| class:GOTerms |
Class "GOTerms" |
| class:GOTermsAnnDbBimap |
Bimap objects and the Bimap interface |
| class:IpiAnnDbMap |
Bimap objects and the Bimap interface |
| colmetanames |
Methods for manipulating a Bimap object in a data-frame style |
| colmetanames,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| colmetanames,FlatBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| colnames |
Methods for manipulating a Bimap object in a data-frame style |
| colnames,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| colnames,FlatBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| contents,Bimap-method |
Environment-like API for AnnDbBimap objects |
| count.links |
Methods for manipulating a Bimap object in a data-frame style |
| count.links,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| count.links,Go3AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| count.mappedkeys |
Methods for manipulating the keys of a Bimap object |
| count.mappedkeys,ANY-method |
Methods for manipulating the keys of a Bimap object |
| count.mappedkeys,Bimap-method |
Methods for manipulating the keys of a Bimap object |
| count.mappedLkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedLkeys,AgiAnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedLkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedLkeys,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedLkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedRkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedRkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedRkeys,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedRkeys,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| count.mappedRkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| createSimpleBimap |
Creates a simple Bimap from a SQLite database in an situation that is external to AnnotationDbi |
| dbconn |
AnnDbObj objects |
| dbconn,AnnDbObj-method |
AnnDbObj objects |
| dbconn,environment-method |
AnnDbObj objects |
| dbfile |
AnnDbObj objects |
| dbfile,AnnDbObj-method |
AnnDbObj objects |
| dbfile,environment-method |
AnnDbObj objects |
| dbInfo |
AnnDbObj objects |
| dbInfo,AnnDbObj-method |
AnnDbObj objects |
| dbInfo,DBIConnection-method |
AnnDbObj objects |
| dbInfo,environment-method |
AnnDbObj objects |
| dbmeta |
AnnDbObj objects |
| dbmeta,AnnDbObj-method |
AnnDbObj objects |
| dbmeta,DBIConnection-method |
AnnDbObj objects |
| dbmeta,environment-method |
AnnDbObj objects |
| dbschema |
AnnDbObj objects |
| dbschema,AnnDbObj-method |
AnnDbObj objects |
| dbschema,DBIConnection-method |
AnnDbObj objects |
| dbschema,environment-method |
AnnDbObj objects |
| Definition |
Class "GOTerms" |
| Definition,GOTerms-method |
Class "GOTerms" |
| dim,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| direction |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| direction,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| direction,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| direction<- |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| direction<-,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| direction<-,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| direction<-,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| length,Bimap-method |
Methods for manipulating the keys of a Bimap object |
| links |
Methods for manipulating a Bimap object in a data-frame style |
| links,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| links,FlatBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| links,Go3AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Lkeyname |
Methods for manipulating a Bimap object in a data-frame style |
| Lkeyname,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Lkeyname,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Lkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Lkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Lkeys,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Lkeys<- |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Lkeys<-,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Lkeys<-,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Llength |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Llength,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Llength,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| loadAnnDbPkgIndex |
Creates an SQLite-based annotation package |
| ls |
Environment-like API for AnnDbBimap objects |
| ls,Bimap-method |
Environment-like API for AnnDbBimap objects |
| makeAnnDbPkg |
Creates an SQLite-based annotation package |
| makeAnnDbPkg,AnnDbPkgSeed-method |
Creates an SQLite-based annotation package |
| makeAnnDbPkg,character-method |
Creates an SQLite-based annotation package |
| makeAnnDbPkg,list-method |
Creates an SQLite-based annotation package |
| makeARABIDOPSISCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeBOVINECHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeCANINECHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeCHICKENCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeECOLICHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeFLYCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeHUMANCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeMOUSECHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makePIGCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeProbePackage |
Make a package with probe sequence related data for microarrays |
| makeRATCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeWORMCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeYEASTCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| makeZEBRAFISHCHIP_DB |
Creates a sqlite database, and then makes an annotation package with it |
| make_eg_to_go_map |
Create GO to Entrez Gene maps for chip-based packages |
| make_go_to_eg_map |
Create GO to Entrez Gene maps for chip-based packages |
| mappedkeys |
Methods for manipulating the keys of a Bimap object |
| mappedkeys,Bimap-method |
Methods for manipulating the keys of a Bimap object |
| mappedkeys,environment-method |
Methods for manipulating the keys of a Bimap object |
| mappedkeys,vector-method |
Methods for manipulating the keys of a Bimap object |
| mappedLkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedLkeys,AgiAnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedLkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedLkeys,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedLkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedRkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedRkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedRkeys,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedRkeys,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mappedRkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| mget |
Environment-like API for AnnDbBimap objects |
| mget,AnnDbBimap-method |
Environment-like API for AnnDbBimap objects |
| mget,ANY,AnnDbBimap-method |
Environment-like API for AnnDbBimap objects |
| popARABIDOPSISCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popBOVINECHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popBOVINEDB |
Populates an SQLite DB with and produces a schema definition |
| popCANINECHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popCANINEDB |
Populates an SQLite DB with and produces a schema definition |
| popCHICKENCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popCHICKENDB |
Populates an SQLite DB with and produces a schema definition |
| popECOLICHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popECOLIDB |
Populates an SQLite DB with and produces a schema definition |
| popFLYCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popFLYDB |
Populates an SQLite DB with and produces a schema definition |
| popHUMANCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popHUMANDB |
Populates an SQLite DB with and produces a schema definition |
| popMALARIADB |
Populates an SQLite DB with and produces a schema definition |
| popMOUSECHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popMOUSEDB |
Populates an SQLite DB with and produces a schema definition |
| popPIGCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popPIGDB |
Populates an SQLite DB with and produces a schema definition |
| popRATCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popRATDB |
Populates an SQLite DB with and produces a schema definition |
| popWORMCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popWORMDB |
Populates an SQLite DB with and produces a schema definition |
| popYEASTCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popYEASTDB |
Populates an SQLite DB with and produces a schema definition |
| popYEASTNCBIDB |
Populates an SQLite DB with and produces a schema definition |
| popZEBRAFISHCHIPDB |
Populates an SQLite DB with and produces a schema definition |
| popZEBRAFISHDB |
Populates an SQLite DB with and produces a schema definition |
| print.probetable |
Print method for probetable objects |
| Rattribnames |
Methods for manipulating a Bimap object in a data-frame style |
| Rattribnames,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Rattribnames,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Rattribnames<- |
Methods for manipulating a Bimap object in a data-frame style |
| Rattribnames<-,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Rattribnames<-,FlatBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Rattribnames<-,Go3AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| revmap |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| revmap,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| revmap,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| revmap,environment-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| revmap,list-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rkeyname |
Methods for manipulating a Bimap object in a data-frame style |
| Rkeyname,AnnDbBimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Rkeyname,Bimap-method |
Methods for manipulating a Bimap object in a data-frame style |
| Rkeys |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rkeys,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rkeys,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rkeys,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rkeys,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rkeys<- |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rkeys<-,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rkeys<-,FlatBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rlength |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rlength,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rlength,AnnDbMap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rlength,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| Rlength,Go3AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| sample |
Environment-like API for AnnDbBimap objects |
| sample,Bimap-method |
Environment-like API for AnnDbBimap objects |
| sample,environment-method |
Environment-like API for AnnDbBimap objects |
| Secondary |
Class "GOTerms" |
| Secondary,GOTerms-method |
Class "GOTerms" |
| show,AnnDbBimap-method |
Bimap objects and the Bimap interface |
| show,AnnDbTable-method |
Methods for manipulating the keys of a Bimap object |
| show,FlatBimap-method |
Bimap objects and the Bimap interface |
| show,GOTerms-method |
Class "GOTerms" |
| subset |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| subset,AnnDbBimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| subset,Bimap-method |
Methods for getting/setting the direction of a Bimap object, and undirected methods for getting/counting/setting its keys |
| summary,AnnDbBimap-method |
Bimap objects and the Bimap interface |
| summary,Bimap-method |
Bimap objects and the Bimap interface |
| Synonym |
Class "GOTerms" |
| Synonym,GOTerms-method |
Class "GOTerms" |