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| GOSemSim-package | Gene Ontology-based Sematic Similarity Measures |
| clusterSim | Semantic Similarity Between Two Gene Clusters |
| geneSim | Semantic Similarity Between two Genes |
| GOSemSim | Gene Ontology-based Sematic Similarity Measures |
| goSim | Semantic Similarity Between Two GO Terms |
| IC | Information content of GO terms |
| Info_Contents_BP_fly | Information content of GO terms |
| Info_Contents_BP_human | Information content of GO terms |
| Info_Contents_BP_mouse | Information content of GO terms |
| Info_Contents_BP_rat | Information content of GO terms |
| Info_Contents_BP_yeast | Information content of GO terms |
| Info_Contents_CC_fly | Information content of GO terms |
| Info_Contents_CC_human | Information content of GO terms |
| Info_Contents_CC_mouse | Information content of GO terms |
| Info_Contents_CC_rat | Information content of GO terms |
| Info_Contents_CC_yeast | Information content of GO terms |
| Info_Contents_MF_fly | Information content of GO terms |
| Info_Contents_MF_human | Information content of GO terms |
| Info_Contents_MF_mouse | Information content of GO terms |
| Info_Contents_MF_rat | Information content of GO terms |
| Info_Contents_MF_yeast | Information content of GO terms |
| mclusterSim | Pairwise Semantic Similarities for a List of Gene Clusters |
| mgeneSim | Pairwise Semantic Similarity for a List of Genes |
| mgoSim | Semantic Similarity Between two GO terms lists |