| getComponent |
Class "KEGGGroup" |
| getComponent,KEGGGroup-method |
Class "KEGGGroup" |
| getComponent,KEGGNode-method |
Class "KEGGNode" |
| getDisplayName |
Get a character string as label for display |
| getDisplayName,graph-method |
Get a character string as label for display |
| getDisplayName,KEGGNode-method |
Get a character string as label for display |
| getDisplayName-methods |
Get a character string as label for display |
| getEntryID |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
| getEntryID,KEGGEdge-method |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
| getEntryID,KEGGNode-method |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
| getEntryID,list-method |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
| getEntryID-methods |
Get entry ID for single or list of KEGGNode or KEGGedge object(s) |
| getKEGGedgeData |
Get or set list of KEGG node or edge data |
| getKEGGgeneLink |
Get KEGG gene link |
| getKEGGgeneLink,character-method |
Get KEGG gene link |
| getKEGGgeneLink-methods |
Get KEGG gene link |
| getKEGGID |
Get KEGG ID |
| getKEGGID,KEGGNode-method |
Get KEGG ID |
| getKEGGID-methods |
Get KEGG ID |
| getKEGGnodeData |
Get or set list of KEGG node or edge data |
| getKGMLurl |
Get KGML file (url) with KEGG PATHWAY ID and (optional) organism |
| getName |
Get 'name' attribute |
| getName,KEGGEdge-method |
Class 'KEGGEdge' |
| getName,KEGGEdgeSubType-method |
Class "KEGGEdgeSubType" |
| getName,KEGGEdgeSubtype-method |
Get 'name' attribute |
| getName,KEGGNode-method |
Get 'name' attribute |
| getName,KEGGPathway-method |
Class "KEGGPathway" |
| getName,KEGGPathwayInfo-method |
Get 'name' attribute |
| getName,KEGGReaction-method |
Class "KEGGReaction" |
| getName-methods |
Get 'name' attribute |
| getNamedElement |
Extract the value in a vector by name |
| getPathwayInfo |
Get KEGG pathway info |
| getPathwayInfo,KEGGPathway-method |
Get KEGG pathway info |
| getPathwayInfo-methods |
Get KEGG pathway info |
| getProduct |
Class "KEGGReaction" |
| getProduct,KEGGReaction-method |
Class "KEGGReaction" |
| getReactions |
Get KEGG reactions |
| getReactions,KEGGPathway-method |
Get KEGG reactions |
| getReactions-methods |
Get KEGG reactions |
| getRgraphvizEdgeNames |
Get Rgraphviz compatitable edge names |
| getSubstrate |
Class "KEGGReaction" |
| getSubstrate,KEGGReaction-method |
Class "KEGGReaction" |
| getSubtype |
Get subtype |
| getSubtype,graph-method |
Get subtype |
| getSubtype,KEGGEdge-method |
Get subtype |
| getSubtype-methods |
Get subtype |
| getTitle |
Get title for given element |
| getTitle,KEGGPathway-method |
Class "KEGGPathway" |
| getTitle,KEGGPathway-method |
Class "KEGGPathway" |
| getTitle,KEGGPathwayInfo-method |
Class "KEGGPathwayInfo" |
| getTitle-methods |
Get title for given element |
| getType |
Get type attribute |
| getType,KEGGEdge-method |
Get type attribute |
| getType,KEGGNode-method |
Get type attribute |
| getType,KEGGReaction-method |
Get type attribute |
| getType-methods |
Get type attribute |
| getValue |
Get 'value' attribute |
| getValue,KEGGEdgeSubType-method |
Class "KEGGEdgeSubType" |
| getValue,KEGGEdgeSubtype-method |
Get 'value' attribute |
| getValue-methods |
Get 'value' attribute |
| graphDensity |
Graph density |
| setKEGGedgeData |
Get or set list of KEGG node or edge data |
| setKEGGnodeData |
Get or set list of KEGG node or edge data |
| show,KEGGEdge-method |
Class 'KEGGEdge' |
| show,KEGGEdgeSubType-method |
Class "KEGGEdgeSubType" |
| show,KEGGNode-method |
Class "KEGGNode" |
| show,KEGGPathway-method |
Class "KEGGPathway" |
| show,KEGGPathwayInfo-method |
Class "KEGGPathwayInfo" |
| show,KEGGReaction-method |
Class "KEGGReaction" |
| splitKEGGgroup |
Split KEGG group |
| subGraphByNodeType |
Subset KEGG graph by node types |
| subKEGGgraph |
Subset KEGG graph, including subsetting node and edge attributes |
| subtypeDisplay |
Get display information for relation subtypes |
| subtypeDisplay,graph-method |
Get display information for relation subtypes |
| subtypeDisplay,KEGGEdge-method |
Get display information for relation subtypes |
| subtypeDisplay,KEGGEdgeSubType-method |
Get display information for relation subtypes |
| subtypeDisplay-methods |
Get display information for relation subtypes |