| getName-methods {KEGGgraph} | R Documentation |
Get 'name' attribute for given object, this method can be used for almost all objects implemented in KEGGgraph package to extract their name slot. See manual pages of individual objects for examples.
KEGGEdgeSubType-class KEGGNode-class KEGGPathway-class KEGGPathwayInfo-class KEGGReaction-class
Jitao David Zhang mailto:j.zhang@dkfz.de
KGML Document Manual http://www.genome.jp/kegg/docs/xml/
sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
pathway <- parseKGML(sfile)
## get pathway name
getName(pathway)
## get node name
nodes <- nodes(pathway)
getName(nodes[[2]])
## get edge name: it is not informative since the nodes are identified
## with file-dependent indices
edges <- edges(pathway)
getName(edges[[7]])
## get subtype name
subtype <- getSubtype(edges[[2]])[[1]]
getName(subtype)