| KEGGReaction-class {KEGGgraph} | R Documentation |
A class to present 'reaction' elements in KGML files
Objects can be created by calls of the function parseReaction.
name:"character" the KEGGID of
this reaction, e.g. "rn:R02749"type:"character" the type of
this reaction, either 'reversible' or 'irreversible'substrateName:"character",
KEGG identifier of the COMPOUND database or the GLYCAN database
e.g. "cpd:C05378"substrateAltName:"character"
alternative name of its parent substrate element productName:"character"
specifies the KEGGID of the productproductAltName:"character"
alternative name of its parent product element signature(object = "KEGGReaction"): show methodsignature(object = "KEGGReaction"): get the
KEGGID of the reactionsignature(object = "KEGGReaction"): get the
type of the reactionsignature(object = "KEGGReaction"): get the
name of substratesignature(object = "KEGGReaction"): get the
name of productJitao David Zhang mailto:j.zhang@dkfz.de
KGML Document Manual http://www.genome.jp/kegg/docs/xml/
## We show how to extract reactions from a 'KEGGPathway' object
mapfile <- system.file("extdata/map00260.xml", package="KEGGgraph")
maptest <- parseKGML(mapfile)
mapReactions <- getReactions(maptest)
## More details about reaction
reaction <- mapReactions[[1]]
getName(reaction)
getType(reaction)
getSubstrate(reaction)
getProduct(reaction)