| categoryToEntrezBuilder {PCpheno} | R Documentation |
Return a list mapping multi-protein complexes (category) IDs to the YEAST ids annotated at the category id.
## S4 method for signature 'CoHyperGParams': categoryToEntrezBuilder(p)
p |
A subclass of HyperGParams-class |
End users should not call this directly. This method gets
called from hyperGTest. To add support for a new
category, a new method for this generic must be defined. Its
signature should match a subclass of
HyperGParams-class appropriate for the new
category.
A list mapping category IDs to YEAST identifiers.
S. Falcon and N. LeMeur
hyperGTest
CoHyperGParams-class
data(ScISIC)
data(essglist)
essential <- names(essglist)
params <- new("CoHyperGParams",
geneIds=essential,
universeGeneIds=rownames(ScISIC),
annotation="org.Sc.sgd.db",
categoryName="ScISIC",
pvalueCutoff=0.01,
testDirection="over")
categoryToEntrezBuilder(params)[1:2]