| psimi25Interaction-class {RpsiXML} | R Documentation |
A class representing interaction data
Objects can be created by calls of the form parsePsimi25Interaction
sourceDb:"character", source databasesourceId:"character", source
database IDinteractionType:"character",
character, the method used for detecting the interaction ,such as
"pull down"expPubMed:"character", PubMed
ID of the publication that describes the experimentexpSourceId:"character",
source database ID of the experimentconfidenceValue:"character",
confidence value of the experimental interactionparticipant:"character",
UniProt IDs of the participants. Important when no bait/prey
information is availablebait:"character", UniProt ID
of the bait prey:"character", UniProt
ID(s) of the prey(s)inhibitor:"character", UniProt
ID of the inhibitor, NA when missingneutralComponent:"character",
UniProt ID of the neutral components, NA when missingsignature(x = "psimi25Interaction"):
finds out interaction type signature(object = "psimi25Interaction"): a print
methodsignature(x = "psimi25Interaction"): finds
out source databasesignature(x = "psimi25Interaction"): returns
ID of the source database signature(x = "psimi25Interaction"): returns the
UniProt ID of the baitsignature(x = "psimi25Interaction"): returns the
UniProt ID(s) of the prey(s)signature(x = "psimi25Interaction"):
returns the confidence value of the interactionTony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>
parsePsimi25Interaction,S4CLASSpsimi25Interactor-class,
S4CLASSpsimi25Experiment-class, S4classpsimi25InteractionEntry-class
showClass("psimi25Interaction")