| SGD.SL {SLGI} | R Documentation |
The Saccharomyces Genome Database (SGD)
provides, for download a table listing all known interactions in
yeast. This table was downloaded on Jan 25, 2007 and three subsets were
extracted. The synthetic lethal interactions, SGD.SL, the
synthetic grow defect interactions, SGD.SynGrowthDefect and the
synthetic rescue interactions, SGD.SynRescue. No other processing
has been done.
data(SGD.SL) data(SGD.SynRescue) data(SGD.SynGrowthDefect)
Each data set is a data frame with the following 7 variables.
V1V2V3V4V5V6V7BioGRID, probably
indicating the source.SGD says this about the file:
Contains interaction data. Tab-separated columns are: 1) interaction_type (mandatory) 2) genes involved and their mutation type, in the format: ORF (mutation_type, action), with multiples separated by a | 3) phenotype (optional, multiples separated by |) 4) description (optional) 5) citation (multiples separated by |) 6) PubMed ID (optional, multiples separated by |) This file is updated weekly.
Z. Jiang
The file can be downloaded from, ftp://genome-ftp.stanford.edu/pub/yeast/literature_curation.
data(SGD.SL)