| aqm.writereport {arrayQualityMetrics} | R Documentation |
aqm.writereport performs an html report from a list
of aqmobj objects. It includes a summary with the outliers detected, titles, plots and legends.
aqm.writereport(name, expressionset, obj)
name |
A name to customize the title of the report that will be "name quality metrics report" |
expressionset |
The expressionset on which the metrics have been run |
obj |
A list of aqmobj.xxx objects |
An html report named 'QMreport.html' in the working directory.
Audrey Kauffmann <audrey@ebi.ac.uk>
library("ALLMLL")
data(MLL.A)
MLLprep = aqm.prepdata(MLL.A, TRUE)
bo = aqm.boxplot(MLL.A, MLLprep)
de = aqm.density(MLL.A, MLLprep)
obj = list("Boxplot" = bo, "Density" = de)
aqm.writereport("Test", MLL.A, obj)