| aqm.spatialbg {arrayQualityMetrics} | R Documentation |
aqm.spatialbg performs representation of the spatial distribution
of the background intensities on the arrays, outlier detection and formats the
output for aqm.plot usage.
aqm.spatialbg(expressionset, dataprep, scale)
expressionset |
Same input as for the function
arrayQualityMetrics |
dataprep |
An object of class aqmobj.prepdata |
scale |
The spatial distribution can be represented on the rank of the intensities or on the logarithm scale. Possible options are thus 'Rank' and 'Log'. |
See the aqm.prepdata help or the aqm Vignette for example of this object.
An object of class aqmobj.spatialbg.
Audrey Kauffmann <audrey@ebi.ac.uk>
aqm.prepdata, aqmobj.prepdata,
aqmobj.spatialbg