| closest.top {bioDist} | R Documentation |
Find the closest genes to the supplied target gene based on the supplied distances.
closest.top(x, dist.mat, top)
x |
the name of the gene (feature) to use. |
dist.mat |
either a dist object or a matrix of distances. |
top |
the number of closest genes desired. |
The feature named x must be in the supplied distances. If so, then
the top closest other features are returned.
A vector of names of the top closest features.
Beiying Ding
cor.dist, spearman.dist, tau.dist,euc,
man,KLdist.matrix,KLD.matrix,mutualInfo
data(sample.ExpressionSet) sE <- sample.ExpressionSet[1:100,] d1 <- KLdist.matrix(sE, sample = FALSE) closest.top(featureNames(sE)[1], d1, 5)