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| attributePages | Gives a summary of the attribute pages |
| attributeSummary | Gives a summary of the attributes groups and categories |
| exportFASTA | Exports getSequence results to FASTA format |
| filterOptions | Displays the filter options |
| filterType | Displays the filter type |
| getBM | Retrieves information from the BioMart database |
| getBMlist | Retrieves information from the BioMart database |
| getGene | Retrieves gene annotation information given a vector of identifiers |
| getGO | Retrieves GO information |
| getLDS | Retrieves information from two linked datasets |
| getSequence | Retrieves sequences |
| listAttributes | lists the attributes available in the selected dataset |
| listDatasets | lists the datasets available in the selected BioMart database |
| listFilters | lists the filters available in the selected dataset |
| listMarts | lists the avilable BioMart databases |
| Mart-class | Class Mart |
| martDisconnect | Disconnects from BioMarts (defunct) |
| NP2009code | Display the analysis code from the 2009 Nature protocols paper |
| show,Mart-method | Class Mart |
| useDataset | Select a dataset to use and updates Mart object |
| useMart | Connects to the selected BioMart database and dataset |