| shapeCon-class {cosmo} | R Documentation |
This class defines a constraint concerning the evolution of the information content over an interval
Objects can be created by calls of the form
new('shapeCon',
shape = ...., # Object of class character
sLower = ...., # Object of class numeric
sUpper = ...., # Object of class numeric
eLower = ...., # Object of class numeric
eUpper = ...., # Object of class numeric
error = ...., # Object of class numeric
)
or by:
makeShapeCon(
shape = ...., # Object of class character
sLower = ...., # Object of class numeric
sUpper = ...., # Object of class numeric
eLower = ...., # Object of class numeric
eUpper = ...., # Object of class numeric
error = ...., # Object of class numeric
)
shape:"character" This slot describes how the information content varies across the interval: 'Linear',
'Monotone Increasing' and 'Monotone Decreasing' are currently implemented sLower:"numeric" starting lower bound sUpper:"numeric" starting upper bound eLower:"numeric" ending lower bound eUpper:"numeric" ending upper bound error:"numeric" error tolerated No methods defined with class "shapeCon" in the signature.
~~further notes~~
Fabian Gallusser, fgallusser@berkeley.edu
boundCon, subMotifCon, posFreqCon, shapeDiffCon, palCon
makeConSet
makeShapeCon("Monotone Increasing",sLower=0,sUpper=1,eLower=1.5,eUpper=2,error=0.5)