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| crlmm-package | Genotype Calling via CRLMM Algorithm |
| calls | Accessors for Calls and Confidences on a SnpSet object |
| calls,SnpSet-method | Accessors for Calls and Confidences on a SnpSet object |
| celDates | Extract dates from the cel file header |
| cnrma | Quantile normalizes the intensities for the nonpolymorphic probe to a HapMap reference distribution. |
| computeCopynumber | Computes copy number |
| confs | Accessors for Calls and Confidences on a SnpSet object |
| confs,SnpSet-method | Accessors for Calls and Confidences on a SnpSet object |
| crlmm | Genotype oligonucleotide arrays with CRLMM |
| crlmmIllumina | Genotype Illumina Infinium II BeadChip data with CRLMM |
| list.celfiles | List CEL files. |
| readIdatFiles | Reads Idat Files from Infinium II Illumina BeadChips |
| snprma | Preprocessing tool for SNP arrays. |