![[R logo]](../../../doc/html/logo.jpg)
| flowFlowJo-package | Turn FlowJo workspaces into flowCore compliant objects |
| collectSummaryFlowInfo | Collect Population Statistics on Flow Files |
| collectSummaryFlowInfo,flowJoList-method | Collect Population Statistics on Flow Files |
| createFlowReport | Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files |
| createFlowReport,fcsSummaryList-method | Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files |
| fcsSummary-class | Collect Population Statistics on Flow Files |
| fcsSummaryList-class | Collect Population Statistics on Flow Files |
| flowFlowJo | Turn FlowJo workspaces into flowCore compliant objects |
| flowJoCompensate | Compensate flow cytometry data the same way as FlowJo does |
| flowJoCompensate,flowFrame,matrix-method | Compensate flow cytometry data the same way as FlowJo does |
| flowJoCompensate,flowSet,matrix-method | Compensate flow cytometry data the same way as FlowJo does |
| flowJoCompensate-methods | Compensate flow cytometry data the same way as FlowJo does |
| flowJoList-class | Parse one or more FlowJo workspaces |
| flowJoObj-class | Parse one or more FlowJo workspaces |
| gateNodeToFilterObject | Parse one or more FlowJo workspaces |
| gateNodeToFilterObject,XMLInternalElementNode-method | Parse one or more FlowJo workspaces |
| gatherFlowJoGates | Parse one or more FlowJo workspaces |
| gatherFlowJoGates,XMLInternalDocument-method | Parse one or more FlowJo workspaces |
| gatherFlowJoTransformations | Parse one or more FlowJo workspaces |
| gatherFlowJoTransformations,XMLInternalDocument-method | Parse one or more FlowJo workspaces |
| getFlowJoCompMatrix | Parse one or more FlowJo workspaces |
| getFlowJoCompMatrix,XMLInternalDocument-method | Parse one or more FlowJo workspaces |
| getFlowJoGates | getFlowJoGates |
| getFlowJoGates,flowJoList,character-method | getFlowJoGates |
| getFlowJoGates,flowJoList-method | getFlowJoGates |
| getFlowJoGates,flowJoObj,character-method | getFlowJoGates |
| getFlowJoGates,flowJoObj-method | getFlowJoGates |
| getFlowJoSummary | Summarize FlowJo Workspaces |
| getFlowJoVersion | Parse one or more FlowJo workspaces |
| getFlowJoVersion,XMLInternalDocument-method | Parse one or more FlowJo workspaces |
| getWellId | Parse one or more FlowJo workspaces |
| getWellId,flowFrame-method | Parse one or more FlowJo workspaces |
| readFlowJoFile | Parse one or more FlowJo workspaces |
| readFlowJoFile,character-method | Parse one or more FlowJo workspaces |
| readFlowJoList | Parse one or more FlowJo workspaces |
| simplifyGateNames | Standardize flow cytometry gate names |
| simplifyGateNames,character-method | Standardize flow cytometry gate names |
| simplifyGateNames,filter-method | Standardize flow cytometry gate names |