| calls |
Accessors for SnpCallSet |
| calls,oligoSnpSet-method |
Methods for oligoSnpSet class |
| calls,SnpCallSet-method |
Accessors for SnpCallSet |
| calls,SnpLevelSet-method |
Class "SnpLevelSet" |
| calls<- |
Accessors for SnpCallSet |
| calls<-,oligoSnpSet,matrix-method |
Methods for oligoSnpSet class |
| calls<-,SnpCallSet,matrix-method |
Accessors for SnpCallSet |
| calls<-,SnpLevelSet,matrix-method |
Class "SnpLevelSet" |
| callsConfidence |
Accessors for SnpCallSet |
| callsConfidence,oligoSnpSet-method |
Methods for oligoSnpSet class |
| callsConfidence,SnpCallSet-method |
Accessors for SnpCallSet |
| callsConfidence,SnpLevelSet-method |
Class "SnpLevelSet" |
| callsConfidence<- |
Accessors for SnpCallSet |
| callsConfidence<-,oligoSnpSet,matrix-method |
Methods for oligoSnpSet class |
| callsConfidence<-,SnpCallSet,matrix-method |
Accessors for SnpCallSet |
| callsConfidence<-,SnpLevelSet,matrix-method |
Class "SnpLevelSet" |
| chromosome |
Accessor for chromosome information |
| chromosome,SnpLevelSet-method |
Class "SnpLevelSet" |
| chromosome<- |
Accessor for chromosome information |
| chromosome<-,AnnotatedDataFrame,character-method |
Accessor for chromosome information |
| chromosome<-,SnpLevelSet,character-method |
Class "SnpLevelSet" |
| cnConfidence |
Accessors for SnpCopyNumberSet objects |
| cnConfidence,oligoSnpSet-method |
Methods for oligoSnpSet class |
| cnConfidence,SnpCopyNumberSet-method |
Accessors for SnpCopyNumberSet objects |
| cnConfidence,SnpLevelSet-method |
Class "SnpLevelSet" |
| cnConfidence<- |
Accessors for SnpCopyNumberSet objects |
| cnConfidence<-,oligoSnpSet,matrix-method |
Methods for oligoSnpSet class |
| cnConfidence<-,SnpCopyNumberSet,matrix-method |
Accessors for SnpCopyNumberSet objects |
| cnConfidence<-,SnpLevelSet,matrix-method |
Class "SnpLevelSet" |
| coerce,SnpCallSetPlus,oligoSnpSet-method |
Class "SnpCallSetPlus" |
| combine,SnpLevelSet,SnpLevelSet-method |
Class "SnpLevelSet" |
| copyNumber |
Accessors for SnpCopyNumberSet objects |
| copyNumber,oligoSnpSet-method |
Methods for oligoSnpSet class |
| copyNumber,SnpCopyNumberSet-method |
Accessors for SnpCopyNumberSet objects |
| copyNumber,SnpLevelSet-method |
Class "SnpLevelSet" |
| copyNumber<- |
Accessors for SnpCopyNumberSet objects |
| copyNumber<-,oligoSnpSet,matrix-method |
Methods for oligoSnpSet class |
| copyNumber<-,SnpCopyNumberSet,matrix-method |
Accessors for SnpCopyNumberSet objects |
| copyNumber<-,SnpLevelSet,matrix-method |
Class "SnpLevelSet" |
| GeneFeatureSet-class |
"FeatureSet" and "FeatureSet" Extensions |
| genomeBuild |
Genome Build Information |
| genomeBuild,DBPDInfo-method |
Genome Build Information |
| genomeBuild,FeatureSet-method |
Genome Build Information |
| geometry |
Array Geometry Information |
| geometry,DBPDInfo-method |
Array Geometry Information |
| getA |
Compute average log-intensities / log-ratios |
| getA,SnpCnvQSet-method |
Compute average log-intensities / log-ratios |
| getA,SnpQSet-method |
Compute average log-intensities / log-ratios |
| getA,TilingFeatureSet2-method |
Compute average log-intensities / log-ratios |
| getM |
Compute average log-intensities / log-ratios |
| getM,SnpCnvQSet-method |
Compute average log-intensities / log-ratios |
| getM,SnpQSet-method |
Compute average log-intensities / log-ratios |
| getM,TilingFeatureSet2-method |
Compute average log-intensities / log-ratios |
| getPD |
Retrieve Platform Design object |
| getPlatformDesign |
Retrieve Platform Design object |
| getPlatformDesign,FeatureSet-method |
Retrieve Platform Design object |
| platform |
Platform Information |
| platform,FeatureSet-method |
Platform Information |
| platform-methods |
Platform Information |
| pmAllele |
Access the allele information for PM probes. |
| pmAllele,AffySNPPDInfo-method |
Access the allele information for PM probes. |
| pmAllele,SnpFeatureSet-method |
Access the allele information for PM probes. |
| pmChr |
Accessor for chromosome information |
| pmChr,FeatureSet-method |
Accessor for chromosome information |
| pmFragmentLength |
Information on Fragment Length |
| pmFragmentLength,AffySNPPDInfo-method |
Information on Fragment Length |
| pmFragmentLength-methods |
Information on Fragment Length |
| pmindex |
Accessors for PM, MM or background probes indices. |
| pmindex,DBPDInfo-method |
Accessors for PM, MM or background probes indices. |
| pmindex,FeatureSet-method |
Accessors for PM, MM or background probes indices. |
| pmOffset |
Accessor to position information |
| pmOffset,AffySNPPDInfo-method |
Accessor to position information |
| pmPosition |
Accessor to position information |
| pmPosition,ExpressionPDInfo-method |
Accessor to position information |
| pmPosition,TilingFeatureSet-method |
Accessor to position information |
| pmPosition,TilingPDInfo-method |
Accessor to position information |
| pmSequence |
Probe Sequeces |
| pmSequence,AffySNPPDInfo-method |
Probe Sequeces |
| pmSequence,DBPDInfo-method |
Probe Sequeces |
| pmSequence,FeatureSet-method |
Probe Sequeces |
| pmStrand |
Accessor to the strand information |
| pmStrand,AffySNPPDInfo-method |
Accessor to the strand information |
| position |
Accessor to position information |
| position,SnpLevelSet-method |
Class "SnpLevelSet" |
| probeNames |
Accessor to feature names |
| probeNames,DBPDInfo-method |
Accessor to feature names |
| probeNames,FeatureSet-method |
Accessor to feature names |