| NgsTilingPDInfoPkgSeed-class {pdInfoBuilder} | R Documentation |
Class "NgsTilingPDInfoPkgSeed"
Description
PDInfo package Seed for NimbleGen Tiling arrays
Objects from the Class
Objects can be created by calls of the form new("NgsTilingPDInfoPkgSeed", ndfFile, xysFile, pairFile, posFile ...).
Slots
ndfFile:- NDF (NimbleGen Design) file
xysFile:- XYS File - used as template
posFile:- POS (Positions) file
chipName:- Name of the chip or platform
manufacturer:- chip/platform manufacturer
url:- chip URL
genomebuild:- The genome build this platform is based
upon.
organism:- organism for chip.
species:- species for chip.
version:- A character vector giving the version
number of the package.
license:- The license of the package
author:- Author of the package
email:- An email address to use in the Maintainer field
biocViews:- Character data for the biocViews field of
the DESCRIPTION file
Methods
- makePdInfoPackage
signature(.Object = "NgsTilingPDInfoPkgSeed"): ...
- chipName
signature(object = "NimbleGenPDInfoPkgSeed"): ...
- getGeometry
signature(object = "NimbleGenPDInfoPkgSeed"): ...
Examples
showClass("NgsTilingPDInfoPkgSeed")
[Package
pdInfoBuilder version 1.8.1
Index]