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| estimerrors | computes the standard deviation of the measurement error using pre-calculated tables specific to the plattform or user-defined table |
| fitgene | Fits the optimal kinetic parameter values for a particular gene. |
| fitgene.lin | Fits the optimal kinetic parameter values for a particular gene. |
| fitgene.nl | Fits the optimal kinetic parameter values for a particular gene and model. |
| fiveGyMAS5 | Example data for the rHVDM package (time course of irradiated human T cells) |
| genestoscreen | Genes differentially expressed |
| HVDMcheck | Checks that an object of class ExpressionSet is compliant with HVDM |
| HVDMreport | generates an HTML report using the input |
| leastnoisychips | Identifiers of the three least noisy arrays in the p53 experiment |
| p53traingenes | Known p53 targets |
| rHVDMplattforms | plattform-specific repository allowing to estimate measurement errors |
| screening | Fits the optimal kinetic parameter values for several genes. |
| screening.nl | Fits the optimal kinetic parameter values for several genes with a nonlinear model. |
| training | Performs the HVDM training step and returns a list containing the results |
| training.nl | Performs the HVDM training step and returns a list containing the results |
| twodosesMAS5 | Example data for the rHVDM package (time course of irradiated human T cells, two different doses) |