| BasicTrackLine-class |
Class "BasicTrackLine" |
| blocks |
Get blocks/exons |
| blocks,RangedData-method |
Get blocks/exons |
| blocks-methods |
Get blocks/exons |
| browseGenome |
Browse a genome |
| browseGenome,missing-method |
Browse a genome |
| browseGenome,RangedDataORRangedDataList-method |
Browse a genome |
| browserSession |
Get a genome browser session |
| browserSession,BrowserView-method |
Get a genome browser session |
| browserSession,character-method |
Get a genome browser session |
| browserSession,missing-method |
Get a genome browser session |
| browserSession,UCSCTableQuery-method |
Querying UCSC Tables |
| BrowserSession-class |
Class "BrowserSession" |
| browserSession-methods |
Get a genome browser session |
| browserSession<- |
Querying UCSC Tables |
| browserSession<-,UCSCTableQuery,UCSCSession-method |
Querying UCSC Tables |
| browserView |
Getting browser views |
| browserView,UCSCSession-method |
Getting browser views |
| BrowserView-class |
Class "BrowserView" |
| browserView-methods |
Getting browser views |
| browserViews |
Getting the browser views |
| browserViews,UCSCSession-method |
Getting the browser views |
| browserViews-methods |
Getting the browser views |
| export |
Export objects to connections |
| export,ANY,ANY,character-method |
Export objects to connections |
| export,ANY,character,character-method |
Export objects to connections |
| export,ANY,character,missing-method |
Export objects to connections |
| export,ANY,missing,character-method |
Export objects to connections |
| export.bed |
Export tracks |
| export.bed,RangedData-method |
Export tracks |
| export.bed,UCSCData-method |
Class "UCSCData" |
| export.gff |
Export tracks |
| export.gff,RangedData-method |
Export tracks |
| export.gff,UCSCData-method |
Class "UCSCData" |
| export.gff1 |
Export tracks |
| export.gff1,ANY-method |
Export tracks |
| export.gff2 |
Export tracks |
| export.gff2,ANY-method |
Export tracks |
| export.gff3 |
Export tracks |
| export.gff3,ANY-method |
Export tracks |
| export.ucsc |
Export tracks |
| export.ucsc,RangedData-method |
Export tracks |
| export.ucsc,RangedDataList-method |
Export tracks |
| export.ucsc,UCSCData-method |
Class "UCSCData" |
| export.wig |
Export tracks |
| export.wig,ANY-method |
Export tracks |
| tableName |
Querying UCSC Tables |
| tableName,UCSCTableQuery-method |
Querying UCSC Tables |
| tableName<- |
Querying UCSC Tables |
| tableName<-,UCSCTableQuery-method |
Querying UCSC Tables |
| tableNames |
Querying UCSC Tables |
| tableNames,UCSCTableQuery-method |
Querying UCSC Tables |
| targets |
microRNA target sites |
| track |
Querying UCSC Tables |
| track,UCSCSession-method |
Class "UCSCSession" |
| track,UCSCTableQuery-method |
Querying UCSC Tables |
| track<- |
Laying tracks |
| track<-,BrowserSession,RangedData-method |
Laying tracks |
| track<-,BrowserSession,RangedDataList-method |
Laying tracks |
| track<-,UCSCSession,RangedDataList-method |
Laying tracks |
| track<--methods |
Laying tracks |
| TrackLine-class |
Class "TrackLine" |
| trackName |
Querying UCSC Tables |
| trackName,UCSCTableQuery-method |
Querying UCSC Tables |
| trackName<- |
Querying UCSC Tables |
| trackName<-,UCSCTableQuery-method |
Querying UCSC Tables |
| trackNames |
Accessing track names |
| trackNames,UCSCSession-method |
Accessing track names |
| trackNames,UCSCTrackModes-method |
Accessing track names |
| trackNames,UCSCView-method |
Accessing track names |
| trackNames-methods |
Accessing track names |
| trackNames<- |
Accessing track names |
| trackNames<-,UCSCTrackModes-method |
Accessing track names |
| trackNames<-,UCSCView-method |
Accessing track names |
| trackNames<--methods |
Accessing track names |
| UCSCData-class |
Class "UCSCData" |
| UCSCSession-class |
Class "UCSCSession" |
| ucscTableQuery |
Querying UCSC Tables |
| ucscTableQuery,UCSCSession-method |
Querying UCSC Tables |
| UCSCTableQuery-class |
Querying UCSC Tables |
| ucscTrackModes |
Accessing UCSC track modes |
| ucscTrackModes,character-method |
Accessing UCSC track modes |
| ucscTrackModes,missing-method |
Accessing UCSC track modes |
| ucscTrackModes,UCSCSession-method |
Accessing UCSC track modes |
| ucscTrackModes,ucscTracks-method |
Accessing UCSC track modes |
| ucscTrackModes,UCSCView-method |
Accessing UCSC track modes |
| UCSCTrackModes-class |
Class "UCSCTrackModes" |
| ucscTrackModes-methods |
Accessing UCSC track modes |
| ucscTrackModes<- |
Accessing UCSC track modes |
| ucscTrackModes<-,UCSCView,character-method |
Accessing UCSC track modes |
| ucscTrackModes<-,UCSCView,UCSCTrackModes-method |
Accessing UCSC track modes |
| ucscTrackModes<--methods |
Accessing UCSC track modes |
| UCSCView-class |
Class "UCSCView" |