| SAFE-class {safe} | R Documentation |
The class SAFE is the output from the function safe. It is also the input
to the plotting function safeplot.
local:"character" describing the local
statistic used.local.stat:"numeric" containing
the (unsorted) observed local statistics for genes.local.pval:"numeric" containing
the (unsorted) empirical p-values for genesglobal:"character" describing the local
statistic used.global.stat:"numeric" containing
the (unsorted) observed global statistics for categories.global.pval:"numeric" containing
the (unsorted) empirical p-values for categories.error:"character" describing the method
used to estimate error rates across multiple comparisons.global.error:"numeric" containing
the (unsorted) error rates associated with the p-values for categories. If not computed,
it will be set to NA.C.mat:"matrix" containing the category
assignments. Each row corresponds to a gene, and each column a category.alpha:"numeric" containing the alpha level
for significance of a category.method:"character" describing the resampling
method used in safe.safeplot produces a plot of the
relative association of expression in a category of genes relative to their
complement.William T Barry: bill.barry@duke.edu