| summary.tsp {tspair} | R Documentation |
This function can be used to summarize a TSP object.
## S3 method for class 'tsp': summary(object,select=NULL,printall=FALSE,...)
object |
A tsp object |
select |
A numerical indicator of which TSP to summarize, if NULL, all TSPs are summarized one at a time |
printall |
If printall=TRUE all TSPs are summarized at once |
... |
Summary arguments (ignored) |
summary() accepts a tsp object calculated on an expression set or gene expression matrix. The result is a table of frequencies for the TSP indicator versus the group indicator.
A table.
Jeffrey T. Leek jtleek@jhu.edu
D. Geman, C. d'Avignon, D. Naiman and R. Winslow, "Classifying gene expression profiles from pairwise mRNA comparisons," Statist. Appl. in Genetics and Molecular Biology, 3, 2004.
tspplot, ts.pair, tspcalc,tspsig, predict.tsp
## Not run: ## Load data data(tspdata) ## Run tspcalc() on a data matrix and grp vector tsp1 <- tspcalc(dat,grp) ## Get the summary for the tsp object. summary(tsp1) summary.tsp(tsp1) ## End(Not run)